KEGG   Sphingopyxis granuli: SGRAN_4135
Entry
SGRAN_4135        CDS       T04372                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sgi  Sphingopyxis granuli
Pathway
sgi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sgi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SGRAN_4135 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sgi03400]
    SGRAN_4135 (ligD)
Enzymes [BR:sgi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SGRAN_4135 (ligD)
DNA repair and recombination proteins [BR:sgi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SGRAN_4135 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AMG76462
UniProt: A0AA86L6U7
LinkDB
Position
complement(4543886..4546411)
AA seq 841 aa
MARRADPLAQYKAKRDFAATPEPAGQVAKGKAAKAEGGRFIVQKHDATRLHYDFRLEADG
VLKSWAVTKGPSADPADKRLAVRTEDHPLAYADFEGAIPKGEYGGGTVMLWDRGTWAPVA
GKSAKDIDRGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAHAGGSDDLVGR
HLTSVLTGRTMAEIAGDVGGAQSLRGAKGAAFTQKMKAAAKHNAAVAKRRAGGGKPPAFR
KPQLATLVDAVPGGNNWFHEIKYDGYRALVAAAGSAVRIHTRNGLDWTDKFAPLAAQFAA
LDLPPCLIDGEIVAYDGAGNPDFSSLQAVIKRGHGAQDADTALNFFAFDLLEEDGKSLAK
LGNLERKERLEALLRAAAPPIAVADHVIGAGERLYTAMCGAGQEGIISKRADAPYAGRRT
RNWVKVKCTRRQEFIIVGWKPSSAKARPFASLLLAQREGDALVYKGNVGTGFDAATMAML
ARKFASRARKTPPLAVERAAARDVRWLTPDLVAEIAFAEYTAGGSVRHASFVGLREDKEA
KDVTPETKQAAPRPTADVRISNRDRVIFPESKATKGDLADYYAAVAPIMLPHMARRPVSL
VRCPQGRAKQCFFQKHDSGSFGPQVHHVPIREKDGGVEDYLYVEDAGGILACVQMGTIEF
HGWGSHVDTLEAPDRMVFDLDPDEGLDFGDVRKAAADLHRQLSDIGLISFAMLSGGKGVH
VVVPLDPGPDWDAHKDFAKRFAEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAI
MPWSARAREGAPVAAPIGWDALADIDSPRHWTIADADALLERAASAELKGWGFARQTLPD
L
NT seq 2526 nt   +upstreamnt  +downstreamnt
atggcgcggcgcgccgacccgctcgcgcagtacaaggccaagcgcgacttcgccgccacc
cccgagccggcggggcaggtggcgaagggaaaggcggcgaaggcggaaggcgggcgcttc
atcgtccagaagcacgacgcgacgcgccttcattatgacttccgcctcgaggccgacggt
gtgctcaagagctgggcggtgacgaaggggccgagcgccgatcccgccgacaagcggctc
gcggtgcgcaccgaggatcatccgcttgcctacgccgatttcgagggcgcgatccccaag
ggtgaatatggcggcggcacggtgatgctgtgggaccgcggcacctgggcgccggtcgcg
ggcaagagcgcgaaggacatcgatcgcggccatctgcacttcacgctcgacggcgaacgg
atgaagggcgaatggctactcgtccgcatgaagccgcgcgcgggcgaaaagcgcgagaac
tggctgctgcgcaagatcgacgacgcccatgccggcggcagcgacgatctggtcgggcgc
catctaacgagcgtcctcaccggccgcaccatggccgagatcgcgggcgacgtgggtggc
gcgcagtcgctgcgcggtgcgaagggcgccgccttcacgcagaagatgaaggccgcggcg
aagcataatgcggcggtcgcgaagcgccgcgccggcgggggcaagccgcccgcctttcgc
aagccccagctcgcgacgctcgtcgatgcggtgccgggcggcaacaactggttccacgag
atcaaatatgacggctatcgcgcgctcgtcgcggcggcggggagcgcagtgcgcatccat
acgcgaaacggcctcgactggaccgacaagttcgcgccgctcgccgcgcagttcgccgcg
ctcgacctgccgccgtgcctgatcgacggagagatcgtcgcctatgacggtgcgggcaat
cccgatttctcgtcgctgcaggcggtgatcaagcgcggccatggcgcgcaggatgccgat
acggcgctgaacttcttcgccttcgacctgctcgaagaggatggcaagtcgctggcgaag
ctgggcaatctcgaacgcaaggaacggctcgaagcgctgctgcgcgccgccgcgccgccg
atcgcggtcgccgatcatgtcatcggcgcgggcgaacgcctgtatacggcgatgtgcggc
gcggggcaggaaggcatcatctcgaagcgcgccgacgctccctatgccggccgccggacg
cgcaactgggtcaaggtcaaatgcacccgccgccaggaattcatcatcgtcggctggaag
ccgtcttcggcgaaggcgcgccccttcgcctcgctgctcctcgcgcagcgcgagggcgat
gcgctggtctacaagggcaatgtcggcaccggcttcgacgctgcgacgatggcgatgctg
gcgcgcaagttcgcgagccgtgcgcgcaagaccccgccgctggcggtcgaacgcgcggcg
gcgcgcgacgtccgctggctgacccccgacctcgtcgccgaaatcgccttcgccgaatat
accgccggcggatcggtgcgccacgcgagcttcgtcggcctgcgcgaggacaaggaggcg
aaggacgtgactccggagacgaagcaggcggcgccccgcccgaccgccgacgtgcggatc
agcaaccgcgaccgcgtcatctttcccgaatcgaaggcgaccaagggcgaccttgccgac
tattatgccgcggtcgcgccgatcatgctgccgcacatggcgcgccgtccggtcagcctc
gtccgctgcccgcaaggacgcgccaagcaatgctttttccagaagcatgattcgggatcg
ttcggtccgcaggtccaccatgtcccgatccgcgagaaggacggcggggtcgaggattat
ctctatgtcgaggacgccggcggcatcctcgcctgcgtccagatggggacgatcgaattc
cacggttggggcagccatgtcgacacgctcgaggcgcccgaccggatggtcttcgatctc
gaccccgacgaagggctcgatttcggcgacgtccgcaaggcggcggccgacctccatcgc
cagctttccgacatcggcctgatcagcttcgcgatgctgtcgggcggcaagggggtgcat
gtcgtcgtgccgctcgacccggggccggactgggacgcgcacaaggatttcgcgaagcgc
ttcgccgaagcgctcagcctcgccgagcccgaccgtttcaccgcgacgatgagcaaggcg
aagcgcaagggcaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcgatc
atgccctggtcggcccgcgcccgcgaaggcgcgccggtcgcggcgccgatcggctgggat
gcgctggcggacatcgacagcccgcgccactggacgatcgccgacgccgatgcgctgctc
gaacgcgcggcgagcgccgagctcaagggctggggcttcgcgcgccagacgcttcccgat
ttgtga

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