Sphingopyxis granuli: SGRAN_4135
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Entry
SGRAN_4135 CDS
T04372
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgi
Sphingopyxis granuli
Pathway
sgi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SGRAN_4135 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_4135 (ligD)
Enzymes [BR:
sgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SGRAN_4135 (ligD)
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SGRAN_4135 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMG76462
UniProt:
A0AA86L6U7
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All DBs
Position
complement(4543886..4546411)
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AA seq
841 aa
AA seq
DB search
MARRADPLAQYKAKRDFAATPEPAGQVAKGKAAKAEGGRFIVQKHDATRLHYDFRLEADG
VLKSWAVTKGPSADPADKRLAVRTEDHPLAYADFEGAIPKGEYGGGTVMLWDRGTWAPVA
GKSAKDIDRGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAHAGGSDDLVGR
HLTSVLTGRTMAEIAGDVGGAQSLRGAKGAAFTQKMKAAAKHNAAVAKRRAGGGKPPAFR
KPQLATLVDAVPGGNNWFHEIKYDGYRALVAAAGSAVRIHTRNGLDWTDKFAPLAAQFAA
LDLPPCLIDGEIVAYDGAGNPDFSSLQAVIKRGHGAQDADTALNFFAFDLLEEDGKSLAK
LGNLERKERLEALLRAAAPPIAVADHVIGAGERLYTAMCGAGQEGIISKRADAPYAGRRT
RNWVKVKCTRRQEFIIVGWKPSSAKARPFASLLLAQREGDALVYKGNVGTGFDAATMAML
ARKFASRARKTPPLAVERAAARDVRWLTPDLVAEIAFAEYTAGGSVRHASFVGLREDKEA
KDVTPETKQAAPRPTADVRISNRDRVIFPESKATKGDLADYYAAVAPIMLPHMARRPVSL
VRCPQGRAKQCFFQKHDSGSFGPQVHHVPIREKDGGVEDYLYVEDAGGILACVQMGTIEF
HGWGSHVDTLEAPDRMVFDLDPDEGLDFGDVRKAAADLHRQLSDIGLISFAMLSGGKGVH
VVVPLDPGPDWDAHKDFAKRFAEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAI
MPWSARAREGAPVAAPIGWDALADIDSPRHWTIADADALLERAASAELKGWGFARQTLPD
L
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcgcgccgacccgctcgcgcagtacaaggccaagcgcgacttcgccgccacc
cccgagccggcggggcaggtggcgaagggaaaggcggcgaaggcggaaggcgggcgcttc
atcgtccagaagcacgacgcgacgcgccttcattatgacttccgcctcgaggccgacggt
gtgctcaagagctgggcggtgacgaaggggccgagcgccgatcccgccgacaagcggctc
gcggtgcgcaccgaggatcatccgcttgcctacgccgatttcgagggcgcgatccccaag
ggtgaatatggcggcggcacggtgatgctgtgggaccgcggcacctgggcgccggtcgcg
ggcaagagcgcgaaggacatcgatcgcggccatctgcacttcacgctcgacggcgaacgg
atgaagggcgaatggctactcgtccgcatgaagccgcgcgcgggcgaaaagcgcgagaac
tggctgctgcgcaagatcgacgacgcccatgccggcggcagcgacgatctggtcgggcgc
catctaacgagcgtcctcaccggccgcaccatggccgagatcgcgggcgacgtgggtggc
gcgcagtcgctgcgcggtgcgaagggcgccgccttcacgcagaagatgaaggccgcggcg
aagcataatgcggcggtcgcgaagcgccgcgccggcgggggcaagccgcccgcctttcgc
aagccccagctcgcgacgctcgtcgatgcggtgccgggcggcaacaactggttccacgag
atcaaatatgacggctatcgcgcgctcgtcgcggcggcggggagcgcagtgcgcatccat
acgcgaaacggcctcgactggaccgacaagttcgcgccgctcgccgcgcagttcgccgcg
ctcgacctgccgccgtgcctgatcgacggagagatcgtcgcctatgacggtgcgggcaat
cccgatttctcgtcgctgcaggcggtgatcaagcgcggccatggcgcgcaggatgccgat
acggcgctgaacttcttcgccttcgacctgctcgaagaggatggcaagtcgctggcgaag
ctgggcaatctcgaacgcaaggaacggctcgaagcgctgctgcgcgccgccgcgccgccg
atcgcggtcgccgatcatgtcatcggcgcgggcgaacgcctgtatacggcgatgtgcggc
gcggggcaggaaggcatcatctcgaagcgcgccgacgctccctatgccggccgccggacg
cgcaactgggtcaaggtcaaatgcacccgccgccaggaattcatcatcgtcggctggaag
ccgtcttcggcgaaggcgcgccccttcgcctcgctgctcctcgcgcagcgcgagggcgat
gcgctggtctacaagggcaatgtcggcaccggcttcgacgctgcgacgatggcgatgctg
gcgcgcaagttcgcgagccgtgcgcgcaagaccccgccgctggcggtcgaacgcgcggcg
gcgcgcgacgtccgctggctgacccccgacctcgtcgccgaaatcgccttcgccgaatat
accgccggcggatcggtgcgccacgcgagcttcgtcggcctgcgcgaggacaaggaggcg
aaggacgtgactccggagacgaagcaggcggcgccccgcccgaccgccgacgtgcggatc
agcaaccgcgaccgcgtcatctttcccgaatcgaaggcgaccaagggcgaccttgccgac
tattatgccgcggtcgcgccgatcatgctgccgcacatggcgcgccgtccggtcagcctc
gtccgctgcccgcaaggacgcgccaagcaatgctttttccagaagcatgattcgggatcg
ttcggtccgcaggtccaccatgtcccgatccgcgagaaggacggcggggtcgaggattat
ctctatgtcgaggacgccggcggcatcctcgcctgcgtccagatggggacgatcgaattc
cacggttggggcagccatgtcgacacgctcgaggcgcccgaccggatggtcttcgatctc
gaccccgacgaagggctcgatttcggcgacgtccgcaaggcggcggccgacctccatcgc
cagctttccgacatcggcctgatcagcttcgcgatgctgtcgggcggcaagggggtgcat
gtcgtcgtgccgctcgacccggggccggactgggacgcgcacaaggatttcgcgaagcgc
ttcgccgaagcgctcagcctcgccgagcccgaccgtttcaccgcgacgatgagcaaggcg
aagcgcaagggcaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcgatc
atgccctggtcggcccgcgcccgcgaaggcgcgccggtcgcggcgccgatcggctgggat
gcgctggcggacatcgacagcccgcgccactggacgatcgccgacgccgatgcgctgctc
gaacgcgcggcgagcgccgagctcaagggctggggcttcgcgcgccagacgcttcccgat
ttgtga
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