Sphingomonas glaciei: M1K48_11865
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Entry
M1K48_11865 CDS
T08593
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sglc
Sphingomonas glaciei
Brite
KEGG Orthology (KO) [BR:
sglc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M1K48_11865 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sglc03400
]
M1K48_11865 (ligD)
Enzymes [BR:
sglc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M1K48_11865 (ligD)
DNA repair and recombination proteins [BR:
sglc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M1K48_11865 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
UUR07620
LinkDB
All DBs
Position
2414251..2416785
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AA seq
844 aa
AA seq
DB search
MARATTRKPAPKGLDIETYNAKRDFAKTGEPKGRKLKGKGDSFVVQKHDASRLHWDFRLE
LDGVLKSWAVPKGPSLDPAVNRLAMRTEDHPLDYGTFEGIIPAGEYGGGTVMLWDRGQWI
PHPDKDPRKTLEEGHLHFTLEGERMKGEWVMFRMKGKPGEKGEAWMLKKVTDEAAAPDEG
EALVEQCLTSVDSGRSMAEIAAGEDVWESNRRGKNGGRTKRKVTPPPPAFLDPQLATLAD
HPPTGSGWIHEYKYDGYRLLLSTGEGAAVAWTRNGKDWSDFFGELTEAAAASLPAGCLID
GEAVALDAAGKPNFGMLQATVKGGKGQERPDLAFYAFDLLVDRGEDIRKLTNLERKARLA
ALMKGVPGPLIYGDHVVGKGEQLFEKICADGGEGIISKKADAPYRGVRTKCWLKVKCIAR
QEFVIVGWQASDKRRGFRSLHLGVNQDGTLRYVGKVGTGFDSATLEILSERMAPLKLDKS
PLEVPRTALRGSTWIKPELVAEIAYTEFTSDGILRHPSFLGLREDKSAKQVVLETPEPVA
APARKGGKATKLCTAADFQLRLTSPEKVIFPEDGLTKGELADYYAAVADLLLIDLAKRPM
TLIRCPSGRAKKCFFQKHDTGSMGEHVLRIPVTEGAGTTEEDYLYVEEAVGALECVQMNT
IEFHGWGSRIDPLEKPDRLVFDLDPDEGLGFERVKTAAVRLRELLADLGLETFPLLSGGK
GIHVIAPLDQEAEWPGVKSFAERFSRAISEAEPETFTANIRKNQRKGRIFLDWLRNQRGA
TAVMPYSARAREGAPVAAPVSWEELDGIEGANRFTIRDAALLLERAGSKGLKGWGQSKQG
LPTV
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgctacgacccgcaagcccgcccccaagggtctcgatatcgagacctacaat
gccaagcgcgactttgcgaagacgggggagcccaaggggcgcaagctcaagggcaagggc
gacagcttcgtcgtccagaagcatgacgcgagccggctgcactgggacttccggctggag
ctggacggggtgctgaagagctgggcggtacccaaggggccgagcctcgatccggcggta
aaccggctggcgatgcggaccgaggaccatccgctcgactatgggacgttcgaagggatc
attccggccggcgaatatggcggcggtacggtgatgctgtgggatcgcgggcagtggatc
ccgcaccccgacaaggacccgcgcaagacgctggaggagggtcatctgcacttcacgctc
gagggcgagcggatgaaaggcgagtgggtgatgttccggatgaaggggaaacccggcgag
aagggcgaggcctggatgctgaaaaaggtcaccgacgaggcggccgctccggacgagggc
gaggcgctggtcgagcagtgcctgaccagcgtcgacagcgggcgcagcatggccgagatc
gccgccggcgaggacgtgtgggagtcgaaccggcgggggaagaatggcgggcggaccaag
cgcaaggtgacgccgccgccgcccgctttcctggacccgcagctggcgacgctggccgac
catccgcccaccggcagcgggtggatccacgagtataaatatgacggctatcggctgctg
ctgagcaccggcgagggcgcggcggtggcgtggacccgcaacggcaaggactggagcgac
ttcttcggcgagctgaccgaggcggcggcggcgagtcttccggccgggtgcctgatcgac
ggcgaggcggtggcgctggacgccgcgggcaagcccaatttcggcatgctgcaggcgacg
gtgaagggcggcaaggggcaggagcggcccgacctcgccttctacgccttcgacctgctg
gtcgatcgcggggaggatatccgcaagctcaccaacctagagcgcaaggcgcggctggcg
gcgctgatgaagggggtgcctgggccgctcatctatggcgaccatgtggtcggcaagggc
gagcaattgttcgagaagatctgcgccgatgggggcgaagggatcatttcgaaaaaggcc
gatgcgccgtatcgaggtgtcaggaccaaatgctggctgaaagtgaagtgcattgcccgg
caggagttcgtgatcgtcggctggcaggcgagcgacaagcggcgcggattccgctcgctg
caccttggcgtgaaccaggacggcacgctgcgctatgtcggcaaggtcggaaccgggttc
gacagcgcgacgctggaaatcctgtccgagcggatggcgccgctgaagctggacaagtcg
ccgctggaggtgccgcggacggcgttgcgcggatcgacgtggatcaagcccgaactggtg
gcggagatcgcctataccgagttcaccagcgacggcatcctgcggcatccaagcttcctg
gggctgcgcgaggacaagtccgcgaagcaggtggtgctggaaacgcccgagccggtggcg
gcgccggcccgcaagggcggaaaggcgaccaagctgtgcaccgccgccgacttccagctg
cgcctgaccagcccggaaaaggtgatctttcccgaggatggactgaccaagggcgaactg
gccgactattatgcggcggtggcggacctgctgctgatcgacttggccaagcggccgatg
acgctgatccgctgtccgtcgggacgggccaagaagtgctttttccaaaagcatgacacc
gggtcgatgggcgagcatgtgctccgcattccggtcaccgagggcgcgggcacgacggaa
gaggattatctctacgtcgaggaggcggtcggggcgctggaatgtgttcagatgaacacg
attgagtttcatggctgggggagccggatcgatccgctggagaagcccgaccggctggtg
ttcgacctcgatcccgacgaggggcttgggttcgagcgggtgaagacggcggcggtgcgg
ctgcgcgagttgctggccgatctggggctggagacgttcccgctgttgtcgggcggcaag
ggaatccacgtcatcgccccgctcgatcaggaggcggaatggccgggggtcaagagcttt
gccgagcggttcagccgcgcgatctcggaggccgaaccggaaacgttcaccgcgaacatc
cgaaagaaccaacgcaagggacgcatcttcctcgactggctgcgcaatcagcgcggcgcg
accgcggtgatgccttattcggcccgcgcccgcgaaggagcgccggtggctgcgccggtg
tcgtgggaggaactggacgggatcgagggagcgaaccgcttcaccatccgcgacgccgca
ctgctgctggagcgggcggggagcaagggactgaagggctggggccagtcgaagcagggt
ctgcccacggtgtga
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