Sphaerochaeta pleomorpha: SpiGrapes_0638
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Entry
SpiGrapes_0638 CDS
T01673
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sgp
Sphaerochaeta pleomorpha
Pathway
sgp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SpiGrapes_0638
09124 Replication and repair
03420 Nucleotide excision repair
SpiGrapes_0638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgp03021
]
SpiGrapes_0638
03400 DNA repair and recombination proteins [BR:
sgp03400
]
SpiGrapes_0638
Enzymes [BR:
sgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SpiGrapes_0638
Transcription machinery [BR:
sgp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SpiGrapes_0638
DNA repair and recombination proteins [BR:
sgp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SpiGrapes_0638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
SYCP2_SLD
Motif
Other DBs
NCBI-ProteinID:
AEV28480
UniProt:
G8QXX5
LinkDB
All DBs
Position
699165..700826
Genome browser
AA seq
553 aa
AA seq
DB search
MNDKPLIVQSDKTMLLDVHHSEAEACRADLVRFCELIKSPEHVHTYALSAISLWNAASSG
VTSEEICEKLTFWSRFPISESVLFYINDIASRFGKVVLTESEDPQYYQLEVKTERIRSEI
MARKAIAKLMIVKSNRSFLIEKYNRGEVKLQLIKMGYPVDDRIVLEKGIPVEMAMCEKTK
GGKTFSVRPYQTQAAQALLGDQGPGCGYGTIVLPCGSGKTVVGMTIMSQLKTRTLIVTTN
VAAVHQWISEILDKMTLTQQQIGEYTGEKKDPREVTVCTYQVLTYRPDKDGPFPHLELLT
KGQWGLIIYDEVHMLPAPVFKITAELQAVYRVGLTATLVREDGREDEVFSLVGPKRFDVP
WNELQQQGFIATAYCSEIRLDLPTDMEIPYAIANKREKYRIASENPLKLDVVKGLVARHP
DDYILIIGQYIKQLESIAAEFKLPIITGSTPNAKREELYRAFKEGESHILVVSKVANFAI
DLPDASVAIQVSGTFGSRSEEAQRLGRILRPKNRSSFFYSVVTRYSTEEEFAANRQKFLA
EQGYSYDIEVWEN
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataaaccactcatagtccaaagtgacaaaacaatgcttttggacgttcatcac
agtgaggctgaagcctgtagggccgatttggtacgattctgtgaacttataaaaagcccg
gagcatgtccacacctatgccttgagcgccatttccctctggaatgctgcatctagcggg
gtaacaagcgaggaaatctgcgaaaaactcacgttctggtcgcgattccctatcagtgaa
agcgtactgttctatatcaatgacatagcctcccgttttggaaaggtagtacttaccgag
agcgaagaccctcagtattaccagctcgaggtaaaaaccgagagaatccgtagcgagatt
atggccagaaaagcaatcgcgaaactcatgattgtaaaaagcaaccgttctttcctcatt
gagaaatacaatcggggtgaggtcaaactccaactgatcaagatgggatatcccgttgac
gacaggattgtccttgagaagggaatccctgttgaaatggcaatgtgcgaaaagacaaag
gggggaaaaaccttcagtgttcgtccataccagacccaggcagcccaggctctgctcggg
gaccaagggccaggttgtggctatggcacaatcgtcctcccctgtggttcagggaaaaca
gtagtcggcatgaccatcatgagccagctcaagacccgtaccctcattgttacgaccaac
gttgcggctgtccaccagtggatttctgaaatcctcgacaagatgactttgacacaacaa
cagatcggagaatacaccggggaaaagaaagaccccagggaagtaactgtctgtacctac
caggtactcacctatcgcccggataaggatggaccgttcccgcacctcgagcttttgaca
aaaggccaatggggcctgattatctacgacgaagtacatatgctccctgccccggtattc
aagattaccgcggaattgcaggcagtgtaccgtgtcggcctaacagctacccttgtccgt
gaagatggccgggaagacgaggtattctctctggtagggccaaaacgatttgatgttccc
tggaatgaattgcagcagcagggtttcatcgcaacagcctattgcagcgagatccgcctg
gatctacccaccgatatggaaatcccctatgcaatagcaaacaaacgggaaaaatatcgc
attgccagcgagaaccccttgaaactggatgtggtaaaaggattggttgcacggcatccc
gatgactacatcctgattatcgggcaatatatcaagcaattggaaagcattgccgctgag
ttcaagctccccattattaccggaagcactccaaatgcaaaaagggaggaactgtacagg
gcttttaaagaaggggaatcccacatcctggtggtaagcaaggtggcgaacttcgccatt
gaccttcctgacgcctccgttgccattcaggtttcagggaccttcggatcccgatcagag
gaagcccagcgcctggggagaatcctcaggcctaaaaaccgttcgagtttcttctactcg
gtagttacccgctattccacggaagaggaatttgcggcaaatcgtcaaaaattccttgca
gagcaaggctattcctatgatatagaggtatgggaaaattga
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