Spiribacter halobius: LMH63_08820
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Entry
LMH63_08820 CDS
T09389
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shai
Spiribacter halobius
Pathway
shai03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LMH63_08820 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shai03400
]
LMH63_08820 (recB)
Enzymes [BR:
shai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LMH63_08820 (recB)
DNA repair and recombination proteins [BR:
shai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LMH63_08820 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
AAA_19
PDDEXK_1
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UEX79730
LinkDB
All DBs
Position
1939068..1942697
Genome browser
AA seq
1209 aa
AA seq
DB search
MSLDLARLPLRGSRLIEASAGTGKTYTIAGLYLRLVLGHGGEAGPPEPLLPPAILVVTFT
EAATRELRERIRQRLSEAAACFREPQAATPDPVLAELLADYPDPGARAVAARRLALAAEW
MDEAAVSTIHAWCYRMLREHAFDSGSLFEQHLETDPSEREAEAVRDYWRSMVYPQPSARA
ALLTQLLGGSPEALHRQLRGLLGHEPARPAERAALEALLDAHLAALEPLKAPWRDDFAAA
AASFRALLPLLNGGKYRNPEKLLEAVGAWARDPAATVPEWSGSYPALEMVSRRGMQARRL
KNATLPDELHPAHLAADAHDSLPPAPRAAVLRHAAAWVRWRFEAEQRQRAELGFGDLLTR
LLEALEQDPAGRLAATIRRQFPVAMIDEFQDTDPVQYAIFERVYDIAGNADREALLLIGD
PKQSIYAFRGADIHSYLRARRATAGRHHTLARNFRSSADMVTAVNRLFSHGEAQPGGAFG
FRSDDADPVPFQPVSAEGRTERFVLADGPPAALTFWVQEGESVSQGAYRETLAARGASVM
TALLEQGRRGEAGFRGEGGLRPLRPADMAVLVRDRREADAVRTALAARGVRSVYLSDRDS
VFRTDEAADLLRWLRACAEPGSDRLLRAALATATLDLDYAALERLNSDELHWEQRVVQFR
DYHRLWRSRGVLPMLRRLLHDFDLPRRLLAQPRGERRLTNLLHLSELMQQRAGELDGEQA
LVRHLAEHLEAAGGTPAEEQVMRLESDEGLVQVVTVHKAKGLEYPLVFLPFACSFRPPTA
DRAPLRYHDADGAPRVALEPDEAALERADAERLAEDVRLLYVAVTRARHACWLGVAPLRL
GNRRQNQLHRSALGHLLAGGEPIPDDGLSAALAPLAAADDAVAIEPAPAVTGERYAGPGE
AAATGSARRPRRPARELWWIASYSALRLAQPEAAPETARAEVIGEVAEEADPAGPAPGVA
AGLHAFPRGPGPGTFLHGLLEWAAREGFAALAADPARLRETVVRRCARRGWGEWAQVLGD
WLQRLIAEPLALPGAGPVTLHGVAAYQPELEFWFETRWTDARRLDRAVRAATLDAAPRPP
AAQSVLNGLLKGFVDLVFEHEGRYWVADYKSNWLGPQARDYAPAALRTTVLEKRYDLQYV
LYTLALHRLLTSRLPDYDYDRHVGGVVYLFLRGIDAEGQGLYCERPPRALIEQLDADLRA
GPDAPEEGP
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggacctcgcccgcctgccgctgcgcggcagccgcctcatagaggccagcgcc
ggcaccggcaagacgtacaccatcgcggggctctacctgcggctggtgctcggccacggc
ggcgaggccggcccgccggagccgctgctgccgccggcgatcctggtggttacctttacc
gaggccgccacccgggagctgcgcgagcgtatccgccagcgcctgagcgaggcggcggcc
tgcttccgggagccgcaggccgccacgccggacccggtcctcgccgaactgctcgcggac
tatccggaccccggggcgcgcgcggtggcggcgcggcgtctggcgctggcggcggagtgg
atggacgaggcggcggtgtccaccatccacgcctggtgctatcgcatgctgcgcgagcac
gccttcgacagcggcagcctgttcgagcagcatctggagaccgaccccagcgagcgcgag
gccgaggcggtccgcgactactggcgcagcatggtctacccgcagccgtcggcgcgggcg
gcgctgctgacgcagctgctgggcggctcgcccgaggcgctgcaccggcagctgcgcggg
ctgctgggccacgagccggcacgcccggcggagcgcgctgcgctggaggcgctgctcgat
gcccacctcgccgccctggagccgttgaaggccccgtggcgggacgacttcgcggccgcg
gcggcgagcttccgcgctctgctgccgctgctcaacggcggcaagtacaggaatccggag
aagcttctggaggccgtgggtgcctgggctcgagacccggccgcaaccgtgccggagtgg
agcggcagctacccggccctggagatggtcagccgccgcggcatgcaggcgcgccggttg
aagaacgccacgctgccggacgagctgcatccggcccacctcgccgccgacgcccacgac
agcctgccgccggcgccgcgggccgcggtgctgcgccatgccgcggcgtgggtgcgctgg
cgcttcgaggccgagcagcgccagcgcgccgagctcggcttcggcgatctcctcacgcgc
ctgctggaggccttggagcaggaccccgccggccgcctcgccgccaccatccgccgccag
tttccggtggcgatgatcgacgagttccaggacaccgacccggtccagtacgccatcttc
gagcgtgtctacgacatcgccggcaacgccgaccgggaggcgctgctgctgatcggcgat
cccaagcagtccatctatgccttccgcggggcggacatccacagctacctgcgggctcgg
cgggccaccgccgggcgccatcacacgctggcccgcaacttccgctcgtcggcggacatg
gtgaccgcggtgaaccggctgttcagccatggcgaggcccagcccggcggcgccttcggc
ttccgcagcgacgacgccgacccggtgcccttccagcccgtgtccgccgaggggcgcacc
gagcgcttcgttcttgccgacggcccgccggcggcgctgaccttctgggtgcaggagggc
gagtccgtgtcccagggcgcctaccgggagacactggccgcgcgcggcgccagcgtgatg
accgcgctgctggagcaggggcgccggggcgaggcggggttccggggcgagggggggttg
cgccccctgcgcccggcagacatggccgtgctcgtgcgtgaccgccgggaggccgacgcc
gtccgcaccgcgctcgccgcccggggcgtgcgcagcgtctacctctccgaccgtgactcg
gtcttccgcaccgacgaggcggcggacctgctgcgctggctgcgcgcctgcgccgagccc
ggcagcgaccggctgctgcgcgcggccctcgccacggccacgctggacctcgattacgcc
gccctggagcggctgaacagcgacgagctgcactgggaacagcgggtggtccagttccgc
gactaccaccgcctctggcgcagccgcggcgtgctgccgatgctgcggcgtctgctgcac
gacttcgacctgccgcgaaggctgctggcgcagccccggggcgagcgccggctgaccaat
ctgctgcacctctccgagctgatgcagcagcgcgccggtgagctggacggcgagcaggcc
ctggtgcgccacctggccgagcacctggaggcggcgggcggcacgccggccgaagagcag
gtgatgcgcctggagagcgacgagggcctggtgcaggtggtcaccgtgcacaaggcgaag
ggcctcgagtatccgctggtgttcctgcccttcgcctgcagcttccgcccgccgaccgcc
gaccgcgcccccctgcgctaccacgatgccgatggtgccccgagggtggcgctggagccg
gacgaggcggcgctggaacgggccgatgccgagcgtctggcggaggatgtgcgcctgctc
tacgtcgccgtcacccgggcccggcacgcctgctggctcggcgtggcgccgctgcggctc
gggaaccggcggcagaaccagctccaccgcagtgcgctcggccatctgctcgccggcggc
gagccgatcccggacgatggcctgtcggcggccctcgccccgcttgccgcggcggacgat
gcggtcgccatcgagccggccccggcggtgaccggcgagcgctacgccggccccggcgag
gccgccgccaccggcagcgcccgccgaccgcggcggcccgcccgagagctgtggtggatc
gcgagctacagcgccctgcgcctggcgcagcccgaggcggccccggagacggcgcgagcc
gaggtgatcggcgaggtggcggaagaggccgatccggcgggtccggcgccgggcgtggcg
gcgggcctgcacgccttcccccgcgggcccggtccgggaacgtttctccacggcctgctg
gagtgggcggcgcgcgagggcttcgccgcgctcgccgccgacccggcgcggctgcgggag
accgtggtgcggcgctgtgcccggcgtggctggggggagtgggcccaggtgctgggcgac
tggctgcagcggctgatcgcggagccgctggcgttgcccggggcggggccggtcacgcta
cacggggttgccgcgtaccagccggagctggagttctggttcgagacccgctggaccgat
gcccggcggctggaccgcgcggtgcgagcggccaccctggacgccgcaccgcgcccgccc
gccgcgcagagcgtgctgaacggtctgctcaagggcttcgtggatctcgtcttcgagcac
gaggggcgctactgggtcgcggactacaagtccaactggctcggcccgcaggcccgggac
tacgccccggcggccctgcgcaccactgtgctcgagaagcgctacgacctgcagtacgtc
ctctacaccctggcgctgcaccggctgctgacgtcccggctgccggactacgactacgat
cgccatgtcggcggtgtggtctatctcttcctgcgcggcatcgacgccgagggccagggc
ctgtactgcgagcgcccgccgcgggcgctcatcgagcagctggatgccgatctgcgggcc
gggccggacgctccggaggagggcccgtga
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