KEGG   Sphingomonas hankookensis: PPZ50_12135
Entry
PPZ50_12135       CDS       T08811                                 
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
  KO
K03089  RNA polymerase sigma-32 factor
Organism
shan  Sphingomonas hankookensis
Brite
KEGG Orthology (KO) [BR:shan00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shan03021]
    PPZ50_12135 (rpoH)
Transcription machinery [BR:shan03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PPZ50_12135 (rpoH)
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r1_2 Sigma70_r3 DUF1870
Other DBs
NCBI-ProteinID: WCP71106
LinkDB
Position
2579805..2580710
AA seq 301 aa
MATGSNVPATIPALGGEASLNRYLSEIRKFPILAPEQEYMLAKRFQEHGDPEAAAQLVTS
HLRLVAKIAMGYRGYGLPVSELISEGNIGLMQGVKKFEPDRGFRLATYAMWWIRASIQEF
ILRSWSLVKMGTTAAQKKLFFNLRRMKSKLDAFEDGDLSPEHLQKIATDLGVTEEEVTSM
NRRMAMGGDTSLNVPMREDGESQWQDWLADDSPLQDSVVAEAQEADVRHGMLVEAMDDLN
DREKHILTERRLTDDPKTLEELSQVYGVSRERVRQIEVRAFEKLQKAMMRLAGDRRMLAA
V
NT seq 906 nt   +upstreamnt  +downstreamnt
atggcaactggcagcaacgtcccggcgacgatcccggcgcttggcggcgaggcgagcctc
aaccgctatctctccgaaatccgcaagttcccgatcctcgcgcccgagcaggaatatatg
ctcgccaagcggtttcaggaacatggcgatccggaggcggcggcgcagctcgtcacctcg
cacctgcgcctcgtcgcaaagatcgcgatgggctatcgcggctacggcctgccggtcagc
gaactgatttccgaagggaatatcgggctgatgcagggcgtgaagaaattcgaacccgac
cgcggcttccgcctcgccacctatgcgatgtggtggattcgcgcctcgatccaggaattc
atcctgcgctcgtggagcctcgtgaagatgggcaccaccgccgcgcagaagaagctgttc
ttcaacctgcgccggatgaagtcgaagctcgacgcgttcgaggacggcgacctcagcccc
gaacacctccagaagatcgcgaccgacctcggcgtgaccgaagaggaagtcacctcgatg
aaccgccgcatggcgatgggcggcgacacgtcgctcaacgtccccatgcgcgaggatggc
gagagccagtggcaggactggctggccgatgacagcccgttgcaggactcggtcgtggcc
gaggcacaggaagccgatgtccgccacggcatgctggtcgaggcgatggacgacctgaac
gaccgcgaaaagcacatcctgaccgaacgccgcctgacggacgaccccaagacgctggaa
gagctgagccaagtctacggcgtcagccgcgaacgcgtccgccaaatcgaggtccgcgcc
ttcgaaaagctgcaaaaggcgatgatgcgcctcgccggcgaccgccggatgctcgccgcg
gtgtaa

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