Shewanella sp. FDAARGOS_354: CEQ32_18565
Help
Entry
CEQ32_18565 CDS
T04944
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shf
Shewanella sp. FDAARGOS_354
Pathway
shf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ32_18565 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shf03019
]
CEQ32_18565 (recQ)
03400 DNA repair and recombination proteins [BR:
shf03400
]
CEQ32_18565 (recQ)
Enzymes [BR:
shf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ32_18565 (recQ)
Messenger RNA biogenesis [BR:
shf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ32_18565 (recQ)
DNA repair and recombination proteins [BR:
shf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEQ32_18565 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
CpeT
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AVL27181
LinkDB
All DBs
Position
4117919..4119742
Genome browser
AA seq
607 aa
AA seq
DB search
METQLLDIHDDPLSQRLAQVFGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLP
ALLMPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGELKLLY
VSPERLLTADFIERMQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMAL
TATADQATRQNICERLGINPFRLLSSFDRPNIRYTVAEKLNAANQLRQFLLQQNGSSGIV
YCSSRRRVDEVAERLTLQGFHAKAYHAGMTAEERGEVQDSFLKDQIDIVVATVAFGMGIN
KSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQ
QVDFHKLNTMAAFAEAQTCRRQVLLHYFDESALEPCGNCDICLDPPKRYNGTEDAQKVLS
CIYRLGQRFGINHLIEVLRGSKGAAIVDRGHDKLSTWGIGKDKSHEYWLSVIRQLIHLGL
ASQDITRGSSITLNPSARPILKGEVALMLAEPRIQLTSIKRKTTQSRVPLNYDRKLFARL
KTLRRTIAEEQDVPPYLVFNDATLAEMAAMMPTSPGEMLAVNGVGERKLSRFGGEFLDEI
AAYLAGE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcagttactcgacatacatgatgatccgctgtctcaacgcctggcgcaggtg
tttggttaccgtgactttagggacggtcagcgcgaggttatcgaacgtgtatgcagtggt
gaggactgcctggtgatcatgcccaccggcggcggtaagagtctgtgttaccagttgcca
gcactgctgatgcctggcatcactatcgtggtatcaccgctgatttcattgatgaaagat
caggtcgacagcctgttgcagacgggggtcaatgccgcctatttaaactcatcgcagccg
cgggagcagagtgtagaggtgcttaggcagttgcatcgaggcgagctaaaactgctgtat
gtgtcccctgagcggttgctgacggctgattttatcgagcgcatgcagtcactgccgctg
tcgatgtttgctattgacgaggcgcactgcatcagccagtggggacatgattttcgaccc
gaatatgccgcccttgggcagttaaagcagctctttccccatgtgccaatgatggcgctc
accgccaccgcggatcaggcgacgcgacaaaatatttgtgagcgcctagggattaatccc
tttagattactatcgagtttcgatcggcccaatattcgctatacggttgccgaaaagctc
aatgccgcgaatcaattacgacagtttttactgcaacaaaatggcagtagcggcattgtc
tactgcagcagtcgtcgccgtgtggatgaggtggcagaaaggctcaccctgcaagggttt
catgctaaggcttaccatgcgggcatgacggcagaagagcgcggcgaagtgcaggatagc
ttccttaaagatcaaatagatattgttgttgcgaccgttgcctttggtatggggattaat
aaatcgaacgtgcgctttgtggtgcattacgatatccctaagagtatcgaagcctattat
caagaaactggccgagcgggccgtgatggactcgaggccgaagcctttatgctgttcgat
cctgccgatattgggcgagtgcgccatcttatcgagcagtctgagccaggaccgcagcag
caggtggatttccataaactcaataccatggccgcctttgccgaggcacaaacctgtcgg
cgccaagtgctgttgcattacttcgatgagagcgcgttagagccctgcgggaactgcgat
atttgtcttgacccgcctaagcgttataacggcaccgaggatgcgcagaaggtgctttct
tgtatttatcgactcggacaacgctttggtattaatcatttgattgaagtattgcgtggc
tccaagggcgccgcgattgttgatcgtggccacgataagctcagcacttgggggattggt
aaagataagagccatgaatattggctgagtgttattcgccaactgatccatttgggctta
gcgagtcaagatattactcgaggctcgtccattactttaaatccttcggcaagaccgatc
cttaagggcgaggtggcgctgatgttggcagagccgcgtatccaactcaccagcataaag
cgtaaaacgacacagtcgagagtgccgcttaactatgatcgcaagttatttgcccgcctt
aaaacactgcgccgcaccattgccgaagagcaggatgtgccgccttatctggtgtttaac
gatgctactttagcggaaatggcggctatgatgccgacaagccctggggaaatgctggca
gttaatggcgtgggggaacgtaaactcagtcgatttggcggtgagttcctcgacgaaata
gccgcttatttagcgggggagtag
DBGET
integrated database retrieval system
