Shigella sp. PAMC 28760: A0259_10065
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Entry
A0259_10065 CDS
T04390
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K05880
transcriptional activator for dhaKLM operon
Organism
shq
Shigella sp. PAMC 28760
Brite
KEGG Orthology (KO) [BR:
shq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shq03000
]
A0259_10065
Transcription factors [BR:
shq03000
]
Prokaryotic type
Other transcription factors
Others
A0259_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
HTH_8
PAS_4
GAF
PAS_8
AAA_2
Xre-like-HTH
PAS_7
AAA
HTH_17
AAA_5
AAA_16
AAA_7
HTH_50
ELMO_ARM
PAS_9
Motif
Other DBs
NCBI-ProteinID:
AMR22948
LinkDB
All DBs
Position
2019341..2021260
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AA seq
639 aa
AA seq
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MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA
LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL
AAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA
IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA
TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI
LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG
KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL
FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ
LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND
FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA
QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcgcttttaacaacgatggtcggggcatatctcccttaattgcaacctcctgg
gagcgatgcaataagctgatgaaacgggagacatggaacgtaccacatcaggcccagggc
gtgacatttgcttctatttatcggcgtaagaaagcgatgctgacgctcgggcaggctgcg
ctggaagatgcctgggaatatatggcaccgcgagagtgtgcgctgtttatcctcgatgaa
accgcctgcattctcagccgtaatggcgatccgcaaaccttgcagcagctaagtgcactg
ggattcaatgacggcacgtattgcgccgagggaattattggtacttgtgcgctatcgtta
gcggctatctctggtcaggccgtgaaaacgatggccgatcaacatttcaaacaggcactc
tggaactgggccttttgtgcaacgccgttgtttgacagcaagggccgattgacgggaaca
atagcgctggcgtgtccggttgagcaaactaccgcagctgatttgccgttgacgttggca
atcgcccgcgaggtcggaaatttactgctgacggacagtttgctcgctgaaactaaccgt
catttaaatcaacttaatgccctgttagaaagtatggatgatggcgtgattagctgggac
gagcagggtaatttgcaatttattaatgcccaggcggcgcgggtcttgcgccttgacgcg
acggcaagtcagggacgggcaatcactgaactcttaacgttacccgccgtattgcaacaa
gcaataaaacaggcacatccgctcaaacacgtagaagcaacctttgaaagccagcaccag
tttattgatgcggtgataacccttaaaccgataatagaaacgcagggaaccagctttatt
ttgttgctccatcctgtggaacagatgcggcagttgatgaccagtcaattaggaaaagtc
agccataccttcgctcatatgccacaggacgatccgcaaacccgccgcttgattcatttt
ggtcgccaggcggcgcgcagtagctttcctgtcctgctttgtggagaagagggcgtgggc
aaggcactgctaagtcaggcaattcataatgaaagcgagcgtgctgcaggtccttatatc
gccgtcaattgtgagttatatggtgatgctgcgctggcggaagaatttattggtggcgat
cgcacggacaatgaaaatggccgtctgagtcggctggaactggcacacggcggcacgctg
tttcttgaaaagattgaatatctggcggtggagttacagtctgctttgcttcaggttatc
aagcagggggttatcacgcgactggatgcgcggcgtttaataccaattgatgtcaaagtg
attgcaacaacgaccgcggacctcgcaatgctggtggaacaaaatcgttttagtcgccag
ctgtattacgcgctgcatgcatttgaaattaccatcccgcctctgcgtatgcggcgtggc
agcattccggcgctggtgaataacaaattacgcagtcttgaaaaacgcttctctacgcgg
ctgaaaattgatgacgatgccctcgctcgcctggtttcttgtgcatggccaggcaacgat
tttgaactttacagcgtcatcgagaatcttgctctgagtagtgataacgggcgcattcgc
gtcagtgatttgccggaacatctgtttaccgagcaggcgacagatgatgtcagcgccacc
cgcctttccaccagtctgtcatttgcggaagttgaaaaagaggcaattattaacgcagcc
caggtcacaggcggtcgcattcaggaaatgtcggctttacttgggatcggccgcactacg
ctgtggcggaaaatgaagcaacatggcattgatgcagggcagtttaagcgccgggtatga
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