Shouchella hunanensis: PQ477_07345
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Entry
PQ477_07345 CDS
T09126
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
shua
Shouchella hunanensis
Pathway
shua03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PQ477_07345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shua03400
]
PQ477_07345
Enzymes [BR:
shua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PQ477_07345
DNA repair and recombination proteins [BR:
shua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PQ477_07345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WDF05887
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Position
1428940..1430742
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AA seq
600 aa
AA seq
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MLATNASTIPKGDQWSYEVKYDGFRCLLHWDEDGPALYSRNKKELSKAFPEIIHACLQIE
EKVKKHLPLILDAEIVSLVNPYQSSFSIVHRRAKLRTKEQVTIYSQRLPVSLMIFDLLME
KGIPLTDLPLKDRKRKLNVLQSQTPTLAIIQPYKNPKEIETIVKKYNGEGIIAKKNTSTY
VPKRSSQWVKIKNYRYVHVILTEYDKQNGYFQGGVYQENTYVPIVQFSHGLKTEDRKALA
TLFEKNGERVGKERWSLPPSICVKIGCISFDGDQLREPFFQSFLLEEKVEDCTWQNLLSQ
LQPLPANVVITSENKPIWPAIQYTKMDYLQYLHAVASTMLPFLTNRLLTTIRYPHGAESE
AFYQKNCPDYAPEFILTHNRDGINYIVCNSLESLLWLGNQLALEYHLPFQKKDQSCPSEI
VFDLDPPSVEQFSLAVKAALALKEVISSFGLMVYIKTSGNKGLQLYLPLPEETFTYQETR
VFCQFISRYVVEQHPEHFTLERLKKNRAGRLYVDYLQHDEGKTIIAPYSPRGHSRGLVAT
PLYWEEVTNQLNPSLFTLTHVVSRLKLEGDPFRTFRENVHEQGKRFSDVLLHLQSLLSKT
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgttagctacaaatgcatctactattcctaaaggagaccaatggtcatatgaggtaaaa
tacgatggatttcgttgcttgcttcattgggacgaggacggaccagcattatacagtcgg
aataaaaaagaattatcgaaagcatttccagaaattattcatgcatgcttacagattgaa
gagaaagtaaaaaagcatcttccacttattttagatgcagagattgtatcattagtgaac
ccttatcaaagtagcttctctattgtgcatcgacgcgcaaaacttcgtaccaaagaacaa
gttacgatctattcccaacgcttgcctgtttcccttatgatttttgatctattaatggaa
aaaggcattcctttaacagaccttccgttaaaggatcggaaacgaaagttgaatgtactt
caaagccagacaccaacgttagccattattcaaccctataaaaaccctaaagagatagag
acgattgtgaagaaatacaatggagaaggcattatagcgaaaaaaaatacaagcacttat
gtgcctaaacgatcctcccagtgggtcaagataaagaactatcgctatgttcatgtcatt
ttaacagagtacgataaacaaaatggttattttcaaggcggggtgtatcaagaaaataca
tacgttcctattgttcagttttcccatggtttaaagactgaagaccgaaaagcgttagcc
actctttttgaaaaaaacggggaacgtgtcggcaaagaacggtggtctttacctccttct
atttgcgtgaaaattggttgcattagttttgatggcgatcaacttagagaaccgtttttt
caatcgtttttactagaagaaaaggtggaggattgcacgtggcaaaaccttctttctcag
ctacagcctttgcctgccaacgtggtgattacgagtgagaataaaccgatttggccagct
atacaatatacaaaaatggattatttgcagtacttacatgcggttgcatcaactatgctc
ccttttttaacaaatcggctacttacaactattcgttatcctcacggtgccgaaagcgaa
gccttttatcaaaaaaattgcccagattatgcacccgaatttatccttacacataaccgt
gacggcataaactatattgtttgtaattcacttgaatcgctactgtggttagggaatcag
ctcgcactagagtatcatcttcctttccagaaaaaagatcaatcatgcccctcagaaatt
gtgttcgacttggatccgcctagtgtggaacaattttctcttgctgtaaaagcagctcta
gcgttaaaggaagtaatttcatcctttggcttaatggtttacatcaaaacgtcgggaaat
aaaggcttgcagctatacctgcctttaccagaagaaacctttacttatcaagagacaagg
gttttctgtcagtttattagtaggtatgtggtagaacagcatccagaacattttacactt
gaacgcttgaagaaaaatcgagcaggacgattatacgttgattatttgcagcatgacgaa
ggaaaaaccatcattgcgccttattcgcctcgtggacatagccgtggtttagttgccact
cctctatattgggaagaggtaacaaatcaattgaacccctccctttttacactgacacat
gttgtaagccgtttaaaattagagggagacccttttcgaacgtttcgagaaaatgtacat
gagcaaggaaagcgattttcagatgttcttctacatctacaatcactcctttctaaaacg
taa
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