Shinella sp. HZN7: shn_33055
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Entry
shn_33055 CDS
T04278
Name
(GenBank) Ti-type conjugative transfer relaxase TraA
Organism
shz
Shinella sp. HZN7
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Gene cluster
GFIT
Motif
Pfam:
MobA_MobL
AAA_30
Bep_C_terminal
AAA_19
Viral_helicase1
AAA_11
AAA_22
UvrD_C_2
AAA_16
PIF1
SH3_13
TrbC
ATP_bind_1
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ANH08965
UniProt:
A0A1A9GCZ2
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Position
pShin-09:43482..46793
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AA seq
1103 aa
AA seq
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MAVPHFSVSVVARGSGRSAVLSAAYRHCAKMAFEREARTIDYTRKQGLLHEEFVIPADAP
EWLRSMIADRSVAGASEAFWNKVEAFEKRSDAQLAKDVTIALPLELTAQQNIALMRDFVD
RHIRSKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAKKVAVVGPDGNAVRNDAGKIV
YELWAGSTDDFNSFRDGWFACQNRHLALAGLDIRVDGRSFEKQGIDLEPTIHLGVGTKAI
ERKADRASKPLELERVELQDARRAENARRIDRNPKLVLDLITREKSVFDERDVAKILHRY
IDDPALFQSLMVRIILHPDTFRLERERIEFATGVRLPAKYTTRDMIRLEAEMANRAIWLS
QRSSHSVRDAALAATFKRHDRLSDEQRTAIEHVAGAERIAAVVGRAGAGKTTMMRAAREA
WEAAGYRVVGGALAGKAAEGLEKEAGIVSRTLSSWEIRWNQGRDQLDSKTMFVLDEAGMV
SSRQMALFVEAVTKAGAKLVLIGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWM
RDASLDLARGKVGKAVDAYRANGKVIGWDLKADAVDNLIAAWDRDYDPTKTSLILAHLRR
DVHMLNQMARIKLIERGVLDKGTMFKTADGDRNFAVGDQIVFLKNEGSLGVKNGMLAKVV
ETGAGRITAQVGDGEHVRQVLVEQRFYNNLDYGYATTIHKSQGATVDRVKVLASLSLDRH
LTYVAMTRHSEDLAVYYGRRSFAKNGGLIQILSRRNAKDTTLDYEKGAFYRQALRFAEAR
GLNIVSVARTLLHDRLEWTVRQKDKLANLGARLAAIAGKLGLVRGASHSPTQKTTKEAKP
MVSGVTTFAKSFEQAVEDKVAADPGLKKQWEEVSTRFHLVYAKPESAFKAIDVEAMLKDE
TVAKSTLATIGSNPEHFGGLKGKTGMFASRTDSREREKAETNAPALARNLERYLRQRADA
ERKYEVEERAVRLKVSIDIPALSVNAKQTLERVRDAIDRNDLPAGLEYALADKMVKVELD
GFARAVAERFGERTFLPLAAKDANGQTFSTVTAGMTAAQKAEVQSAWNAMRTVQQLAAHE
RTTEALKQAETLRQTKRQGLSLK
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
gtggccgtcccccatttctccgtcagcgtcgtcgcccgcggctccggccgcagcgccgtg
ctgtcggcggcctaccggcattgcgcgaagatggcgttcgagcgtgaggcacggaccatc
gactacacccgcaagcagggcctcctgcatgaggaattcgtaatccctgccgatgcgccg
gagtggctccgcagtatgatcgccgatcgttcggtcgccggcgcgtcggaagccttctgg
aacaaggtggaggcattcgagaaacgatccgatgcgcaactcgccaaggatgtcaccatc
gccttgccgctcgagctgactgcccagcagaacatcgcgctgatgcgggatttcgtggat
cggcatatcaggtcgaagggcatggtggctgactgggtctatcatgacgccccaggcaat
ccgcacgttcatctcatgacgacgttgcggccgctgaccgaggacggtttcggtgccaag
aaggttgcggtggtcgggccggacggcaatgccgttcgcaacgatgccggcaagatcgtc
tatgaactctgggccggcagcaccgacgacttcaacagtttccgcgatggttggtttgcc
tgccagaaccggcacttggcgctcgccggtctcgatatccgagtggatggccgctccttc
gaaaaacaggggatcgatctcgaaccgaccatccatctcggcgttggcacgaaggcaatc
gagcgcaaagccgatcgcgcctccaagccgttggagctcgagcgcgtcgaattgcaggac
gctcgcagggctgagaacgcgagacgaatcgaccgtaatccgaagctcgtgctcgacctg
atcacgcgtgagaagagcgtcttcgacgagcgcgatgtcgccaagatccttcaccgctac
attgacgatcccgccctgttccaaagcctcatggtccggatcatcctgcaccccgacacg
ttccgcctcgagcgcgagcggatcgaatttgccaccggggttaggttacccgccaaatac
acgacccgcgacatgatccgcctcgaagccgagatggccaatcgcgccatctggctgtct
cagcgttcgtcgcacagcgtgcgggacgcggcactcgccgcaacgttcaagcgccacgac
cggctgtcggatgagcagagaaccgcgatcgagcatgtagcgggagccgagcggatcgcg
gccgttgtcggccgcgccggcgccggtaagacgacgatgatgagggccgcgcgcgaagcc
tgggaagcggctggctatcgtgttgtcggtggcgcacttgccggcaaggcggccgagggc
ctggagaaggaagccgggattgtctctcggacgctctcgtcctgggaaatccgttggaac
caaggccgcgatcagctcgatagcaagacgatgtttgttctcgacgaagccggcatggtg
tcgtcgcggcagatggccctgttcgtcgaagcggtgacgaaggccggcgccaagctcgtt
ctcatcggcgatcccgaacagcttcaaccgatcgaagccggcgccgccttccgcgccatc
gcagaccgcatcggctatgcggaactcgaaaccatctatcgccagcgcgagcaatggatg
cgcgatgcctcgcttgatttggcgcgcggcaaggtcggcaaggcggtcgacgcctaccgt
gccaatggcaaggtgatcggctgggatttgaaggccgacgccgtcgacaatctcatcgcc
gcttgggaccgcgattacgatccgacgaagacgtcgctgatccttgcccatttgcgtcgg
gacgttcacatgctgaaccagatggcgcgcatcaagctgatcgaacgcggggttctcgac
aaaggaaccatgttcaagacggcggatggcgatcgcaacttcgctgtcggcgaccagatc
gtattcctcaagaatgaagggtcgctcggcgtcaagaacggcatgctggccaaggtcgtc
gagacgggagcgggacgcatcacggcgcaggtcggcgatggcgagcatgtccgccaggtg
ctggtcgagcaacgcttctacaacaacctcgactacggctatgcgaccaccattcacaag
agccagggcgcgaccgtcgatcgggtcaaggtcctggcgtcgctgtcgcttgatcggcat
ctgacctacgttgccatgacgcgtcatagtgaggacctggccgtctactatggccgcaga
tccttcgctaagaacggtgggctgatccagatcctgtcgcgacgcaatgcgaaggacacg
acgctcgactatgagaagggcgccttctaccgccaggcacttcgctttgccgaagcgcgc
ggtctcaacatcgtcagcgtcgcccgcacgttgcttcacgatcgcctggaatggacagtc
agacagaaggacaagctcgccaatcttggtgcgcgccttgccgccattgccggcaagctc
ggtctcgtccgtggcgccagccattctccaacccaaaaaaccaccaaggaggcaaagccc
atggtctcgggcgtcacgactttcgccaaatcattcgaacaagcggtcgaggacaaggtc
gccgccgatccaggattgaagaagcagtgggaggaggtctcgacccgcttccacctggtc
tacgcgaagccggaaagcgccttcaaggcaatcgacgtcgaagcgatgctgaaggacgag
actgtcgcgaaatccacgctggcgacgatcggatcgaaccctgaacacttcggtgggctg
aagggcaagaccgggatgttcgcgagccgcaccgacagccgagagcgcgagaaggctgag
accaatgcgcctgcgctcgcgcgtaatctcgagcgctatctgcggcagcgggcggacgcg
gaacgcaaatatgaggtcgaggaacgtgccgtccgtctgaaggtgtcgatcgatattccg
gcgctctcggtcaacgcaaaacagactctcgaacgtgtgcgtgatgcgatcgaccgcaac
gacctgccagccggtctcgaatatgcgcttgccgacaagatggtgaaggtggaactggac
ggatttgcgcgagccgtagcggagcgtttcggcgagcgaaccttcctgcctttggccgcc
aaggacgccaatggacagacgttcagcactgtcaccgcagggatgacggccgcacagaag
gccgaggtgcaatcggcgtggaatgcgatgcggacagtgcagcagctggctgcgcatgag
cggacgaccgaggcgttgaaacaggccgaaaccctgcgtcagacgaagaggcaggggctc
tctctcaaatga
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