Streptococcus intermedius B196: SIR_1604
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Entry
SIR_1604 CDS
T02830
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
sib
Streptococcus intermedius B196
Pathway
sib03030
DNA replication
sib03430
Mismatch repair
sib03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SIR_1604 (polC)
03430 Mismatch repair
SIR_1604 (polC)
03440 Homologous recombination
SIR_1604 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sib03032
]
SIR_1604 (polC)
03400 DNA repair and recombination proteins [BR:
sib03400
]
SIR_1604 (polC)
Enzymes [BR:
sib01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SIR_1604 (polC)
DNA replication proteins [BR:
sib03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SIR_1604 (polC)
DNA repair and recombination proteins [BR:
sib03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SIR_1604 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
DNA_pol3_finger
PHP
DNA_pol3_a_NII
DNA_pol3_a_NI
HHH_6
tRNA_anti-codon
RNase_H_2
HHH_3
DEDDh_C
Rv2179c-like
DUF842
Zn-ribbon_8
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AGU76953
UniProt:
T1ZGA0
LinkDB
All DBs
Position
complement(1687925..1692319)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSSTFEILMNQINMPLDMRQSSAFLHAEIEQVLVHKVSHIWEFHFSFEEILPIDIFQELK
KCLKEEFSKTGNQAVFEIRTINKDFTDELLQAYYQEAFTEGPCTSQGFRSMYQGLKVHAE
GNQLVIEGPSSIDTAHFQKIHLPNLAKQLVKFGFPQFQCQVKASDALTQQQVETFQAEKE
KIVQAANDEALKAIEALQKMAAPPVEEKTSYSGFQAKKATARPKLDKAEITQMNAIQTEE
NRIVFEGMVFDLEKKVTRTGRVLINFKMTDYTSSFALQKWFKNEEEAKKYDMIKKNSWLR
VRGNIEMNNFTHDLTMNVQDVQEVVHYDRKDLMPEGEKRIEFHAHTNMSTMDALPEVEDL
IATAAKWGHKAVAITDHGNVQSFPHGYKAAKKAEIQLIYGMEANIVEDRVPITYNEIDME
LGEATYVVFDVETTGLSAIYNDLIQVAASKMYKGNVIAEFDEFINPGHPLSAFTTDLTGI
TDEHVKNAKPLEQVLQEFQEFCKDTVLVAHNATFDVGFMNVNYERHGLPKITQPVIDTLE
FARNLYPEYKRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFIRDVAEKRGITNLNK
LNTDLVDENSYKKARVKHATIYVKNQTGLKNIFKLVSLSNTKYFEGVPRIPRTVLDAHRE
GLVLGTACSEGEVFDAVVSQGLDAAVEVAKYYDFIEIMPPAIYAPLIAKEQVKDMEELHT
IIKNLIEVGKRLDKPVLATGDVHYIEPEEEIYREIIVRSLGQGAVINRTIGHGENAQPAP
LPKAHFRTTNEMLDEFAFLGDELARQVVIENPNQLALTFEPIEVVKGDLYTPFIDKSEEK
VAELTYAKAFEIYGNPLPDIVDHRIERELSSILGNGFAVIYLASQMLVQRSNKRGYLVGS
RGSVGSSFVATMIGITEVNPLSPHYVCGKCQYSEFITDGSYGSGFDMPDKDCPKCGHKLS
KNGQDIPFETFLGFDGDKVPDIDLNFSGEDQPSAHLDVRDIFGEEYAFRAGTVGTVAAKT
AYGFVKGYERDYGKLYRDAEVERLAQGAAGVKRTTGQHPGGIVVIPNYMDVYDFTPVQYP
ADDLTAEWQTTHFNFHDIDENVLKLDVLGHDDPTMIRKLQDLSGIDPNDIPMDDAGVMAL
FSGTDILGVTQEQIGTSTGMLGIPEFGTNFVRGMVDETHPTTFAELLQLSGLSHGTDVWL
GNAQDLIKQGIADLSTVIGCRDDIMVYLMHKGLEPKMAFTIMERVRKGMWLKISDEERNA
YIAAMKENNVPEWYIESCGKIKYMFPKAHAAAYVMMALRVAYFKVHHPIYYYCAYFSIRA
KAFEIKTMSGGLDAVKRRMSEIAEKRKNNDASNVEIDLYTTLEIVNEMLERGFKFGKLDL
YKSHATEFLIEGDTLIPPFSAMDGLGDNVARQVVRAREEGEFLSKAELRKRGGLSSTLVE
KMDDMGILGNMPEDNQLSLFDEFF
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaacgtttgaaattttaatgaatcaaatcaatatgccacttgatatgagacaa
tcaagtgcctttttacatgcagaaattgagcaagttctggtgcataaagtcagccatatc
tgggaatttcatttttcttttgaagaaattttgccgattgacatatttcaagaattgaaa
aagtgcttgaaggaagaattttctaaaacggggaatcaagcagtttttgagataaggaca
ataaacaaagatttcacagatgagctattgcaggcttattatcaagaagcttttacagaa
ggtccttgtactagtcagggatttcgcagtatgtatcaagggttgaaggtgcatgctgaa
ggaaatcaactagtgattgaaggcccttcaagtattgatacggctcattttcagaagatt
catttgccaaatttggcaaaacagttggtcaagtttggttttccacagtttcaatgtcag
gttaaggcaagcgatgctttaacacagcagcaagtcgaaactttccaagctgagaaagaa
aagattgtacaagcagcgaatgatgaagctctaaaagccatagaagcgctgcagaaaatg
gcagctccacctgttgaagaaaagacaagttactctggttttcaagcgaaaaaagctact
gcacgaccaaaattggataaagctgaaatcacgcagatgaatgccattcagactgaggaa
aatcggattgtctttgaaggaatggttttcgatcttgaaaaaaaggttactcgcacaggg
cgcgtactcattaattttaagatgaccgattatacttctagctttgcgcttcagaaatgg
tttaaaaatgaagaagaagctaagaaatatgacatgattaagaaaaattcatggttgcgt
gtacgtggaaatattgaaatgaataacttcacgcatgatttgactatgaatgtacaagat
gtacaggaagtggtgcattatgaccgtaaagatctcatgcctgaaggtgagaaacggatt
gaatttcacgcgcataccaatatgtcaactatggatgccctaccagaagtcgaagatttg
attgcgacagctgcgaagtgggggcataaagcagttgcgattactgaccacggcaatgtg
cagagttttcctcatggttataaagctgctaaaaaagccgagattcagttgatttatggc
atggaagccaatattgttgaagatcgtgtgcccattacttacaatgaaatagatatggag
ttgggagaagccacttatgttgtctttgacgtagaaacgactggtttgtctgctatttat
aatgatttgattcaggtagcagccagcaagatgtacaagggcaatgtcatcgcggaattt
gacgaatttattaatccaggacaccctttgagtgcgtttacgacagatttgacgggaatt
acagatgaacatgttaaaaatgcgaaaccacttgagcaagttttacaggaatttcaggaa
ttttgcaaagatacggtacttgtcgcccataatgctacctttgacgtgggctttatgaat
gttaactatgagcgtcatggcttgccgaaaatcacccaaccagtcattgacacgctggaa
tttgcccgcaacctctatccagaatacaagcggcatggtttggggcctctgactaagcgt
tttcaagtatcgcttgaccatcaccacatggccaattacgatgcggaagcaacaggccga
ctgctatttatcttcatcagagatgtagcagaaaagcgtggaattaccaatcttaataag
ttgaatacggatttggtggatgaaaattcctataaaaaagcacgagtgaaacacgctacg
atttatgtgaaaaatcaaacagggttgaagaatattttcaaattggtcagtctgtccaat
actaaatattttgaaggtgtaccacggattccgcgaacggttttggatgcgcatcgagaa
ggcttggttctaggaactgcttgttcagaaggagaagtgtttgatgcggttgtttcacag
ggcctggatgcagctgtcgaagtagcgaaatattatgactttatcgaaatcatgcctcca
gcgatttatgctccattgattgccaaagagcaggttaaggatatggaggagctgcacaca
atcatcaagaatttgattgaagttggaaaacgactagacaaaccagttctggctaccgga
gatgtgcattatattgagcctgaggaagaaatttatcgggagattatcgttaggagtttg
ggacaaggtgccgtgattaaccggaccataggtcacggtgaaaatgctcaaccagctccg
cttcccaaagcacatttccgtacaaccaatgaaatgctggatgaattcgcttttttaggt
gatgaactagctcgacaagtggtcattgagaatcccaatcagttggcgttaacctttgaa
ccaattgaagtggtaaaaggggacctctatacaccatttattgataaatctgaagaaaaa
gtcgctgagttgacttatgcaaaggcttttgaaatctatggtaatccactaccagatatt
gtagatcatcgaattgaacgggaattatcctctattttagggaatggttttgccgtgatt
tatttggcttcacaaatgcttgtacagcgttctaataaacgaggctatttagttggttcg
cgtggttcagttggctccagttttgtggcgaccatgattgggattactgaggtcaatcct
ttgtcgcctcactatgtctgtggcaaatgtcaatacagcgagttcatcacggatggctcc
tatggttctggctttgatatgccagataaggactgtccaaaatgcggccacaagctgagc
aagaatggccaggatattcctttcgagaccttccttggatttgatggggacaaggtccct
gatattgacttgaacttctctggagaggatcagcctagtgcccacttagacgttcgagac
atttttggggaggaatatgcttttcgggctggtactgttggtacagttgctgctaaaacg
gcctatggttttgtcaagggctacgagcgcgactacgggaagctctatcgggatgccgaa
gttgagcgtctggctcagggagctgccggagttaaacgaacgactggacaacacccaggg
ggaattgtggttattccaaactatatggatgtctatgattttacaccagttcaataccca
gcggatgacttgactgctgaatggcaaacaacccactttaacttccacgatattgatgag
aatgtcctaaaactagatgtacttggtcatgatgatccaactatgattcggaagttacag
gatttgtcaggaattgatcccaatgatattcctatggatgatgctggcgtcatggccctc
ttttctgggacagacatcctgggtgtgactcaggagcaaatcggtacgtcaactggtatg
ctagggattccggaatttggaaccaactttgtacggggcatggtggatgaaactcaccca
acaactttcgcagaattacttcaattatcaggcttgtctcacggtaccgacgtatggctg
ggaaatgcacaagatttgattaagcaggggattgccgacctgtctactgttattggttgt
cgggacgacatcatggtttacctcatgcataagggcttagagcctaaaatggcctttacg
attatggaacgggtgcggaaaggcatgtggctcaaaatttctgacgaagaaagaaatgct
tacattgctgctatgaaagaaaataatgtaccagaatggtacattgagtcatgtggaaaa
atcaagtacatgttccccaaggcccatgcagcagcctatgttatgatggccttacgggtg
gcctatttcaaggtgcatcatccgatttattactactgtgcctacttctccattcgggcc
aaagcttttgaaattaagaccatgagtggcggacttgatgctgtcaagcgccggatgagc
gaaattgctgaaaagcgcaagaataatgacgcctccaatgtagaaattgacctttatacg
actctggaaatcgtcaatgaaatgctggagcgtggcttcaagttcgggaagctggatctc
tataagagccatgcgactgagtttctcatcgaaggagatacccttatcccacctttctct
gctatggatggtctgggtgacaacgttgcccgccaagtggtcagagcgcgggaagaaggc
gaattcctctctaaggcagaactccgcaaacgtggcggtctctctagcaccctagtcgaa
aaaatggacgacatgggcattctgggcaatatgcccgaggacaaccagttgagtctgttt
gatgagtttttctaa
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integrated database retrieval system
