Sphingopyxis indica: KNJ79_17280
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Entry
KNJ79_17280 CDS
T09492
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sina
Sphingopyxis indica
Pathway
sina03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sina00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KNJ79_17280 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sina03400
]
KNJ79_17280 (ligD)
Enzymes [BR:
sina01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KNJ79_17280 (ligD)
DNA repair and recombination proteins [BR:
sina03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KNJ79_17280 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WOF42884
LinkDB
All DBs
Position
3678276..3680783
Genome browser
AA seq
835 aa
AA seq
DB search
MTRADPLAQYNKKRDFKLTPEPAGKVAKGSGNRFIVQKHDATRLHYDFRLEAGGVLKSWA
VTKGPSANPDDKRLAVRTEDHPMAYADFEGVIPRGEYGGGTVMLWDRGTWAPVEGKSAKD
IERGHLHFTLDGERMKGEWLLVRMKPRPREKRENWLLRKIDDAYAGGSDDLTGRYLTSVL
TDRPMAEIAGDEGGEQSLKGAKGKLFAKKMAAAAAHNRKVAKTARPDAKPPEFRKLQLAT
LVDSVPAGNNWFHEIKFDGYRALVAAAGERVVVYTRSGLDWTGKFAPLARHIAALDLPPC
LIDGEIVAYGKDGNPDFSALQAVLKRGHGAQDEATDLRFFAFDLLEEGGKPLTALGNLER
KERLEALLRDAAPPVAVADHVIGAGEKLYEAMCGAGQEGIIAKRADAPYAGRRSKNWVKI
KCTRRQEFVIVGWKESSAKARPFASLLLAQREKDELVYKGNVGTGFDADTMATLAAKLAR
RARKTAPVEVDRAAARKVHWVKPDLVAEIAFAEYTAGGAVRHASFVGLRADKEAKDVTPE
TRAKAPAATSDVRISSRDRIIFPEAKATKGDLADYYAAVAPVMLPHLARRPVSLVRCPQG
RAKQCFFQKHDSGSFGPHVHHVPIEEKDGAVEDYLYVEDADGILACVQMGTIEFHGWGSH
ADAVERPDRMVFDLDPDEGLDFADVKKAAADLKRQLADIGLVSFAMLSGGKGVHVVVPLS
PGHSWDAHKDFAKRFAEALALSEPGRFTATMSKAKRKGRIFIDYLRNQRGSTAVMPYSAR
AREGAPVAAPIGWDALAEVDSPRRWSIGDAEDLLERAASAELKGWGFARQALPDF
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgacccgtgccgatcccctcgcccaatataacaaaaagcgcgatttcaagctgaccccc
gaacccgcgggcaaggtcgcgaaaggctccggcaaccgcttcatcgtccagaagcacgac
gcgacgcgcctccattacgatttccggctcgaggcgggtggcgtgctcaaaagctgggcg
gtcaccaaggggccgagcgcgaaccccgacgacaagcggctcgcggtgcgcaccgaagat
catccgatggcctatgccgatttcgagggggtgatccccaggggcgaatatggcggcggc
acggtgatgctgtgggaccgcggcacctgggcaccggtcgaaggcaagagcgcgaaggac
atcgagcgcggccacctccatttcaccctcgacggcgagcggatgaagggcgaatggctg
ctcgtccgcatgaagccgcgcccgcgcgaaaagcgcgagaactggctgctccgcaagatc
gacgatgcctatgcgggcggcagcgacgacctgaccggccgctacctcaccagcgtcctc
accgaccgcccgatggcggagatcgcgggcgacgagggcggcgagcaatcgctgaagggc
gcgaagggcaagctcttcgcgaagaagatggccgccgccgcggcgcataaccgcaaggtc
gccaaaaccgccaggcccgacgccaaaccgcccgaattccgcaagctccagctcgcgacg
ctcgtcgacagcgtgccggcgggcaacaactggttccacgagatcaagttcgacggttat
cgcgcgctcgtcgccgcggcgggggagcgggtcgtcgtctatacgcgcagcgggctcgac
tggaccggcaagttcgcgccgctcgcgcgccacatcgccgcgctcgacctgccgccctgc
ctgatcgacggcgagatcgtcgcctatggcaaggacggcaaccccgacttctcggcgctt
caggcggtcctgaagcgcgggcacggcgcgcaggacgaagcgaccgatcttcgcttcttc
gccttcgacctgctcgaagagggcggcaagccgctcaccgcgctcggcaatctcgaacgc
aaggaacgattggaagcgctgctccgcgacgcggcgccgccggtcgcggtcgccgatcac
gtcatcggcgccggcgaaaaactctacgaggcgatgtgcggcgcggggcaggaagggatc
atcgccaagcgcgccgatgcgccctatgcgggccgccgctcgaagaattgggtgaagatc
aaatgcacccgccgccaggaattcgtcatcgtcggctggaaggagagttcggcgaaggcg
cgcccctttgcctcgctgctcctcgcgcagcgcgaaaaggacgagctcgtctacaagggc
aatgtcggaaccggcttcgacgccgatacgatggcgacgctcgcggcgaaactcgcgcgc
cgcgcgcgcaagaccgcgccggtcgaagtcgacagggcggcggcgcgcaaggtccattgg
gtaaagcccgatcttgtcgccgagatcgccttcgccgaatataccgccggcggcgcggtc
cgccacgcgagcttcgtcggcctgcgcgccgacaaggaggcgaaggacgtgacacccgaa
accagggcgaaagcccccgccgccacgagcgacgtccggatcagcagccgcgaccgtatc
atcttccccgaggcaaaggcgaccaagggcgatctcgccgactattatgccgcggtggcg
ccggtcatgctcccgcacctcgcgcgccgcccggtcagcctcgtccgctgcccgcagggg
cgcgcaaagcaatgttttttccagaagcatgattcgggcagcttcggcccccacgtccac
cacgtcccgatcgaagagaaggacggcgcggtcgaggattatctctatgtcgaggatgcg
gacggcatcctcgcctgcgtccagatggggacgatcgaatttcacggctggggcagccac
gccgacgccgtcgaacggcccgaccgcatggtcttcgacctcgaccccgacgaagggctc
gatttcgccgatgtgaagaaggccgccgccgacctgaagcgccagctcgccgacatcggc
ctcgtcagcttcgcgatgctctcgggcggcaagggggtgcatgtcgtcgtgccgctgagc
cccggccacagctgggacgcgcacaaggattttgccaaacgcttcgcggaagcgctcgcg
ctgtcggaacccggccgcttcaccgcgacgatgagcaaggcgaagcgcaagggcaggatc
ttcatcgactatcttcgcaaccagcgcggcagcaccgcggtgatgccctattcggcgcgc
gcgcgcgaaggcgcgccggtcgcggcgccgatcggctgggacgcgctcgccgaggtggac
agcccgcgccgctggagcatcggggacgccgaagacctgctggagcgcgccgcgagcgcc
gaactcaagggctggggctttgcccgccaggcgctgccggatttctga
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