KEGG   Sphingobium indicum: SIDU_07840Help
Entry
SIDU_07840        CDS       T04604                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sinb  Sphingobium indicum
Pathway
sinb03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sinb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SIDU_07840
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sinb03400]
    SIDU_07840
Enzymes [BR:sinb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SIDU_07840
DNA repair and recombination proteins [BR:sinb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SIDU_07840
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: APL94420
UniProt: A0A1L5BNB0
LinkDB All DBs
Position
complement(1642879..1645368)
Genome map
AA seq 829 aa AA seqDB search
MADADPLTAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD
LEKGHLHFILHGQRMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR
SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL
VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLAAEIAAMNLPGAL
IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA
LLGEGAAHIHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ
EFVIVGWTPSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA
ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTS
EAQSSIRISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF
FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER
PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP
EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS
VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggccgatgccgatccgctcaccgcctataaccgcaagcgcgatttcagccggactcgc
gaaccggcgggcaggcgcggccgcaggcagggcaacggcttcatcgtgcagaagcatgac
gcgacccgcctgcattacgatttccgcctggaaatggacggcgtgctcaagagctgggcg
gtgacgcgagggcccagcatcgatcccgcggacaagcggctggccgtccgaaccgaggat
cacccgctgtcctacgcgacgttcgaggggacgatccccaagggcgaatatggcggcggc
acggtcatgctctgggacgagggcacctgggagccggtccccggcaagagcgcgagcgac
cttgagaaagggcatctccacttcatcctgcacggccagcggatgcgcggcgaatggctg
ctgatccggctgaagccgcgaggtcgggaaaagagggaaaactggctgctgcgcaagatc
gaggatgcccatgccggcagcgctgacgatcttatcgcccgcaatctgacaagcatcagg
agcggccgcaccatggcggaaatcgcggcgggcgcgccggccatttcgctgaaggggaag
aagggaaaggccttcgacgcggcgatggcgcaggccgaccgggccgtcccggcgaagagg
cgcgccagggcgggatcggaccgcccgccgcccttccagccgccgcaactggcgaccctg
gtcgacgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggctatcgc
tgcctggtttcggcatcgggcgggaaggtcaggattttcacgcggtccggcctcgactgg
acggatcgcttcgcgcccctcgccgccgaaatcgcggcgatgaacctgcccggcgccctg
atcgatggggaggtcgtcgcgctcggcagcgatgggaatccggatttctccacgctccag
cagctgttgaagggggaggggaaggcggcgctgcacctcttcgccttcgacctgctccaa
ctggacgggcaggatctgaccgccatgcccaatatcggccggaaggaaaagctggccgcc
ctgttgggcgaaggtgccgcgcatatccatgtcggggaccatgtcgtcggggcaggggaa
aggctgttccaggccatgtgcggcgcggggcaggaggggatcatttcaaagcgcgccgat
gccccctatcgcggcgcgcgcacgaagaattggctgaaggtcaaatgcacccgccgccag
gaattcgtcatcgtcggctggacccccagcggcgccagcgggcgctccatccgcaacctg
ctgctcggccagcgggagggggaggggctggtctatgcgggaaaggtcggcacgggcttc
aacgcggccaacagcgccgggctggtcgcggcgctcggcaagcgggggcgcaagaccgcc
gcgctcagcgtgccgcgcagcgaaagccggggcgcccaatgggttcgccccgatctggtc
gcggaaatcgcctttgccgaattcacggcggaaaatatcgtccgccatgccagcttcctg
ggcctgcgcgaggacaaggcggccagggaggtgcgacgcgaggaagccatgccgacgtct
gaagcccaaagttcgatccggatcagcaatcccgaccgcctgatcttcccggaggcgaag
atcaccaagggcgagcttgccgaatattacgcccgcatgggcgcggcgatgctgccctgg
atcgcccgtcggccgatcagcctggtccgctgtccgcagggccgcgcgaagaaatgtttt
ttccagaagcatgacagcggcagtttcggcgaccatgtcaaacatgtcccgatccgcgag
aaggaggggaatgaggaggattatctttatatagaggatagcgatggcctgttggcctgc
gtccagatgggggcgatcgaatttcacggctggggttcgggcgtcgcggatgtcgagcgg
ccggatcgcatgatcttcgacctcgatccggacgaagggctggacttcgaggatgtgaag
aaggcggcgcgggacatccgccgggcgctggaggatatgggccttgccagcttcgccatg
ctgtcgggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaatggccg
gaggtcaaggatttcgctgaccgcttcgcccgtgccctcgccgcccaggaaccggatcgc
ttcaccgcgacgatgagcaaggcgaagcgcaagggccgaatcttcatcgactggctgcgc
aaccagcgcggcgccacggcggtgctgccctatgtggtgcgcgcccgcgagcttgcgtcc
gtcgccgcccccgtcacctgggaagagttggacgggatcgagagcgcggcgcacttcacg
gtgaaggacgccgccctcctgctcgaccgcgcttcttcgcgagacttgcgcggctggggg
gaagcgcaccagccgctgcccgctcattag

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