Sphingobium indicum B90A: SIDU_07840 Help Entry SIDU_07840        CDS       T04604                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism sinb  Sphingobium indicum B90A Pathway sinb03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:sinb00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     SIDU_07840  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:sinb03400]     SIDU_07840 Enzymes [BR:sinb01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      SIDU_07840 DNA repair and recombination proteins [BR:sinb03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      SIDU_07840 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  APL94420 UniProt:  A0A1L5BNB0 LinkDB All DBs Position complement(1642879..1645368) Genome browser AA seq 829 aa AA seqDB search MADADPLTAYNRKRDFSRTREPAGRRGRRQGNGFIVQKHDATRLHYDFRLEMDGVLKSWA VTRGPSIDPADKRLAVRTEDHPLSYATFEGTIPKGEYGGGTVMLWDEGTWEPVPGKSASD LEKGHLHFILHGQRMRGEWLLIRLKPRGREKRENWLLRKIEDAHAGSADDLIARNLTSIR SGRTMAEIAAGAPAISLKGKKGKAFDAAMAQADRAVPAKRRARAGSDRPPPFQPPQLATL VDAVPTGNGWMHEIKYDGYRCLVSASGGKVRIFTRSGLDWTDRFAPLAAEIAAMNLPGAL IDGEVVALGSDGNPDFSTLQQLLKGEGKAALHLFAFDLLQLDGQDLTAMPNIGRKEKLAA LLGEGAAHIHVGDHVVGAGERLFQAMCGAGQEGIISKRADAPYRGARTKNWLKVKCTRRQ EFVIVGWTPSGASGRSIRNLLLGQREGEGLVYAGKVGTGFNAANSAGLVAALGKRGRKTA ALSVPRSESRGAQWVRPDLVAEIAFAEFTAENIVRHASFLGLREDKAAREVRREEAMPTS EAQSSIRISNPDRLIFPEAKITKGELAEYYARMGAAMLPWIARRPISLVRCPQGRAKKCF FQKHDSGSFGDHVKHVPIREKEGNEEDYLYIEDSDGLLACVQMGAIEFHGWGSGVADVER PDRMIFDLDPDEGLDFEDVKKAARDIRRALEDMGLASFAMLSGGKGIHVVVPLTPQAQWP EVKDFADRFARALAAQEPDRFTATMSKAKRKGRIFIDWLRNQRGATAVLPYVVRARELAS VAAPVTWEELDGIESAAHFTVKDAALLLDRASSRDLRGWGEAHQPLPAH NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt atggccgatgccgatccgctcaccgcctataaccgcaagcgcgatttcagccggactcgc gaaccggcgggcaggcgcggccgcaggcagggcaacggcttcatcgtgcagaagcatgac gcgacccgcctgcattacgatttccgcctggaaatggacggcgtgctcaagagctgggcg gtgacgcgagggcccagcatcgatcccgcggacaagcggctggccgtccgaaccgaggat cacccgctgtcctacgcgacgttcgaggggacgatccccaagggcgaatatggcggcggc acggtcatgctctgggacgagggcacctgggagccggtccccggcaagagcgcgagcgac cttgagaaagggcatctccacttcatcctgcacggccagcggatgcgcggcgaatggctg ctgatccggctgaagccgcgaggtcgggaaaagagggaaaactggctgctgcgcaagatc gaggatgcccatgccggcagcgctgacgatcttatcgcccgcaatctgacaagcatcagg agcggccgcaccatggcggaaatcgcggcgggcgcgccggccatttcgctgaaggggaag aagggaaaggccttcgacgcggcgatggcgcaggccgaccgggccgtcccggcgaagagg cgcgccagggcgggatcggaccgcccgccgcccttccagccgccgcaactggcgaccctg gtcgacgccgtgcccacgggcaatggctggatgcacgagatcaaatatgacggctatcgc tgcctggtttcggcatcgggcgggaaggtcaggattttcacgcggtccggcctcgactgg acggatcgcttcgcgcccctcgccgccgaaatcgcggcgatgaacctgcccggcgccctg atcgatggggaggtcgtcgcgctcggcagcgatgggaatccggatttctccacgctccag cagctgttgaagggggaggggaaggcggcgctgcacctcttcgccttcgacctgctccaa ctggacgggcaggatctgaccgccatgcccaatatcggccggaaggaaaagctggccgcc ctgttgggcgaaggtgccgcgcatatccatgtcggggaccatgtcgtcggggcaggggaa aggctgttccaggccatgtgcggcgcggggcaggaggggatcatttcaaagcgcgccgat gccccctatcgcggcgcgcgcacgaagaattggctgaaggtcaaatgcacccgccgccag gaattcgtcatcgtcggctggacccccagcggcgccagcgggcgctccatccgcaacctg ctgctcggccagcgggagggggaggggctggtctatgcgggaaaggtcggcacgggcttc aacgcggccaacagcgccgggctggtcgcggcgctcggcaagcgggggcgcaagaccgcc gcgctcagcgtgccgcgcagcgaaagccggggcgcccaatgggttcgccccgatctggtc gcggaaatcgcctttgccgaattcacggcggaaaatatcgtccgccatgccagcttcctg ggcctgcgcgaggacaaggcggccagggaggtgcgacgcgaggaagccatgccgacgtct gaagcccaaagttcgatccggatcagcaatcccgaccgcctgatcttcccggaggcgaag atcaccaagggcgagcttgccgaatattacgcccgcatgggcgcggcgatgctgccctgg atcgcccgtcggccgatcagcctggtccgctgtccgcagggccgcgcgaagaaatgtttt ttccagaagcatgacagcggcagtttcggcgaccatgtcaaacatgtcccgatccgcgag aaggaggggaatgaggaggattatctttatatagaggatagcgatggcctgttggcctgc gtccagatgggggcgatcgaatttcacggctggggttcgggcgtcgcggatgtcgagcgg ccggatcgcatgatcttcgacctcgatccggacgaagggctggacttcgaggatgtgaag aaggcggcgcgggacatccgccgggcgctggaggatatgggccttgccagcttcgccatg ctgtcgggcggcaagggcatccacgtcgtcgtgccgctgacgccgcaggcgcaatggccg gaggtcaaggatttcgctgaccgcttcgcccgtgccctcgccgcccaggaaccggatcgc ttcaccgcgacgatgagcaaggcgaagcgcaagggccgaatcttcatcgactggctgcgc aaccagcgcggcgccacggcggtgctgccctatgtggtgcgcgcccgcgagcttgcgtcc gtcgccgcccccgtcacctgggaagagttggacgggatcgagagcgcggcgcacttcacg gtgaaggacgccgccctcctgctcgaccgcgcttcttcgcgagacttgcgcggctggggg gaagcgcaccagccgctgcccgctcattag

DBGET integrated database retrieval system