Sinimarinibacterium sp. NLF-5-8: GT972_07440
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Entry
GT972_07440 CDS
T06400
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Pathway
sini03030
DNA replication
sini03430
Mismatch repair
sini03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GT972_07440 (holA)
03430 Mismatch repair
GT972_07440 (holA)
03440 Homologous recombination
GT972_07440 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sini03032
]
GT972_07440 (holA)
03400 DNA repair and recombination proteins [BR:
sini03400
]
GT972_07440 (holA)
Enzymes [BR:
sini01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GT972_07440 (holA)
DNA replication proteins [BR:
sini03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GT972_07440 (holA)
DNA repair and recombination proteins [BR:
sini03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GT972_07440 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
Motif
Other DBs
NCBI-ProteinID:
QHS11477
UniProt:
A0A6P1UDM5
LinkDB
All DBs
Position
complement(1529926..1530951)
Genome browser
AA seq
341 aa
AA seq
DB search
MQLKPQQIAAHLKSTLAPLYLVAGEEPLLVQETLDAIRARARAQGFAERTVLDVERGFDW
SQVFEAFASLSLFAERRMVEVRMNAGPDAAGAKALQALAQQTCADVLLIVVCGALDARAR
KAAWFNAFDQAGVTVYAWPVKGRDCVPWLEARLRSAGVRADADAVRLLAERTEGNLLAAA
QDVAKLALLFPDQAVSAEALAHAVADSARFAAFDLMDRILEGDGAAALRSLARLREEGAT
PLEILGALMWGLRQLIKAVLAYGRSRDAQSACEAAGIRRFQQDRYIRAMQRTRAGVALSW
LKRAARIDQLVKTGQDSAAWEELITLTVAASGAALISTPPQ
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
gtgcaactcaaaccgcaacaaatcgctgctcatctcaagtccacgctggcgccgctgtat
ctggtggccggcgaggagccgctgctggtgcaggaaaccctggatgccatccgcgcgcgc
gcgcgcgcgcagggttttgccgagcgcacggtactggatgtggagcgcggctttgactgg
tcgcaggtgtttgaggcatttgccagcctgtcgctgtttgccgagcggcgcatggttgaa
gtgcggatgaatgccggccccgacgccgccggtgccaaggcgttgcaggcgctggcgcag
caaacctgtgccgatgtgttgctgatcgtggtctgcggggcgctggatgcgcgcgcgcgc
aaggccgcgtggttcaacgccttcgatcaggccggggtgacggtgtacgcctggccggta
aaggggcgcgactgcgtgccgtggctggaggcgcggctgcgcagtgccggtgtgcgcgcc
gatgccgatgccgtgcgccttctggccgagcgcaccgagggcaatctgctggccgccgcg
caggacgtggccaagctggccctgttgtttcccgatcaggccgtcagcgccgaagccctg
gcgcatgcggtggccgatagcgcgcgctttgccgcgtttgatttgatggatcgcatcctc
gaaggcgacggcgccgctgccctgcgcagccttgcgcggctgcgcgaggagggcgcaacg
ccgctggagattctgggcgcgctgatgtggggattgcggcagttgatcaaggccgtgctg
gcctatggccgcagccgtgatgcgcaatcggcctgtgaggcggcaggcatccgtcgcttt
cagcaggatcgctatatccgggcgatgcagcgcacgcgcgcgggcgtggccctgagctgg
ctcaagcgtgccgcgcgcatcgatcagctggtcaaaaccgggcaagactctgcggcgtgg
gaagaattgataacattgaccgttgccgcaagtggtgcggcgctgatttcaaccccaccg
caatga
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