Sinimarinibacterium sp. NLF-5-8: GT972_11535
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Entry
GT972_11535 CDS
T06400
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sini
Sinimarinibacterium sp. NLF-5-8
Brite
KEGG Orthology (KO) [BR:
sini00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sini03032
]
GT972_11535 (gyrB)
03400 DNA repair and recombination proteins [BR:
sini03400
]
GT972_11535 (gyrB)
Enzymes [BR:
sini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
GT972_11535 (gyrB)
DNA replication proteins [BR:
sini03032
]
Prokaryotic type
DNA Topoisomerases
GT972_11535 (gyrB)
DNA repair and recombination proteins [BR:
sini03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GT972_11535 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QHS10707
UniProt:
A0A6P1UBI4
LinkDB
All DBs
Position
complement(2421328..2423805)
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AA seq
825 aa
AA seq
DB search
MSTPNANDYDESSIQQLEGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGYC
DDIVVTIHSDHSISVADNGRGIPVGVKMDDKHEPKRSAAEIVMCVLHAGGKFNHNSYKVS
GGLHGVGVSCVNALSRWLKLTIRRDGKKYQLEFEHGKPVNRVIEINDGIEVSPARVIGQS
EQRGTEVRFLADDEIFDRIEYQYEILAKRLRELSFLNNGVRIRLIDERNDRQEDFAFAGG
VRGFVEYINRAKTVLHPSIFHSTGVANVPVSGGEVVPVTVEVAMQWNDSYAEQVLCFTNN
IPQSDGGTHLTGLRSAMTRIINKYIEEHDFAKRAKVDVAGDDMREGLACVLSVKMPDPKF
SSQTKMKLVSSEARPAVEEVVAEKLAEFLLEQPNEAKIICGKIVEAASAREAARKAREMT
RRKGVMDGIGLPGKLADCQEKDPAKSELFLVEGDSAGGSAKQGRDRQFQAILPLKGKILN
VERARLERMLSSQEVATLITALGCGIGQDEFNVEKLRYHRIIIMTDADVDGAHIRTLLLT
FFYRHMYTLVERGYIYIAQPPLYKLKAGKTETYVKDDAELNQWLINAALDGASLTAEGSS
EAADAETLDRIVREYANVATLIERMARRYDFHVLDTLARLSPLPTQADELAQWQQRYQTA
LLGDGHNGRFEVQAQIGSEGPLVNVHRRLHGNVQTFAFNSDFFASSEYQRIAELRAHINA
IQAGAGVIKRGERSSAVQNFDDAFTWLLSEPRRGLHIQRYKGLGEMNPEQLRETTLDPKN
RRLVRVEVTDAVSADQIFTTLMGEHVEPRREFIEKNALLVGNLDL
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccaaacgcaaacgattatgacgaatccagcattcagcagttagaagggttg
gaggcagttcgcaagcgccccggaatgtatatcggcgatacatcggatgggactggcttg
caccacatggtctttgaagtggtggacaatgccattgacgaagcgctggccgggtactgc
gacgatatcgtggtgacgatccattccgatcattccatctcggttgccgataatggccgt
ggcattcctgtcggcgtcaaaatggacgacaagcacgagcccaagcgcagcgccgctgaa
attgtcatgtgcgtgctgcacgccggcggcaaattcaatcacaacagctacaaggtttcg
ggcggtctgcatggggttggcgtgtcatgcgtcaatgccctgtcgcgctggctgaagctg
acgattcgccgcgacggcaaaaaatatcagttggaatttgaacacggtaaacccgtcaat
cgcgtcattgagatcaacgatggcatcgaggtttcgcccgcgcgcgtgatcggacaaagc
gagcagcgcggaaccgaggttcgctttctggctgacgatgaaatctttgatcgtatcgaa
taccagtatgagattctggccaagcgattgcgtgagctttcatttttgaacaacggcgtg
cggattcgcttgatcgatgagcgcaatgaccggcaagaagattttgcatttgccggtggc
gtgcggggatttgtcgaatacatcaatcgtgccaaaacggtattgcacccgagcattttt
cattcaaccggcgtggccaatgtgccggtttccggaggggaggtggttccggtcacggtg
gaagtggcgatgcaatggaacgacagttacgccgaacaggtgctgtgttttaccaacaat
attccacaaagcgacggcggcacccatttgaccggcttgcggtcggcgatgacgcggatc
atcaataaatacattgaagaacacgactttgccaaaagagccaaggttgatgtggcaggg
gacgatatgcgcgagggcttggcctgcgtgctttcggtcaaaatgcccgatcccaagttt
tcttcacaaaccaagatgaagctggtttccagcgaagcgcgtcctgcggttgaagaagtg
gtggctgaaaaactcgctgagtttttgttggaacagccgaatgaggccaagatcatctgc
ggcaagatcgtagaggcggccagcgcgcgcgaagccgcacgcaaggcgcgcgaaatgacg
cggcgcaagggcgtcatggacggcatcggtctgcctggaaaactggccgattgccaggaa
aaggatccggccaaatccgaattgttcctggtcgaaggtgattcggccggcggcagtgcc
aagcaaggcagggatcgtcagtttcaggcgattttgccgctcaagggcaaaatcctgaac
gtggagcgcgcgcgcctggaacggatgctgtcgtcacaggaagtggccacgctgatcacg
gcgctgggctgcggcattggccaggatgaattcaacgttgaaaagctgcgctatcaccgc
atcatcatcatgaccgacgccgacgtggacggcgcgcacattcgcacgctgctgctgacg
tttttctaccgccacatgtataccttggttgagcgcggttacatctacattgcgcagccg
ccgctgtacaaactcaaagcgggcaagaccgaaacctatgtcaaagacgatgccgagctg
aatcaatggctcattaacgccgcattggacggtgccagcctaaccgccgaaggcagcagc
gaagccgcagacgctgaaacgctggatcggatcgtgcgtgaatacgccaacgttgccacg
ctgatcgagcgcatggcgcgccgctacgattttcatgtgttggataccctcgcgcgctta
tcgccgttgccgacgcaggctgatgaattggcgcagtggcagcagcgctatcaaaccgcg
ctgctcggtgatggacacaacggccgttttgaagtgcaggcgcaaatcggcagcgaaggc
ccgctggttaacgtgcaccgccgattgcatggcaacgtgcagacttttgcatttaacagc
gacttttttgccagcagcgaatatcagcgcatcgctgaattacgcgcgcatatcaacgcc
attcaagccggtgccggggtgatcaaacgcggtgaacgcagcagcgccgtgcaaaacttt
gacgatgcgtttacctggctactcagcgaaccgcgccgtggtttgcacatccagcgctat
aaagggctgggtgagatgaatcctgaacaattgcgtgaaaccacgctggatcccaaaaac
cggcggttggtgcgggttgaagtcaccgatgcggtatcggccgatcaaatctttaccacg
ttgatgggtgaacacgttgaaccgcgccgtgagttcattgagaaaaacgcgctgctggtt
ggcaacctggatctgtaa
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