Shewanella inventionis: K8B83_12075
Help
Entry
K8B83_12075 CDS
T07895
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sinv
Shewanella inventionis
Pathway
sinv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sinv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8B83_12075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sinv03019
]
K8B83_12075
03400 DNA repair and recombination proteins [BR:
sinv03400
]
K8B83_12075
Enzymes [BR:
sinv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8B83_12075
Messenger RNA biogenesis [BR:
sinv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8B83_12075
DNA repair and recombination proteins [BR:
sinv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K8B83_12075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
UAL41645
LinkDB
All DBs
Position
2728610..2730616
Genome browser
AA seq
668 aa
AA seq
DB search
MTTHTPIIAQGSSRLNVADLHLLLQQQFGFAEFREGQQQVIETILSGHSALAIFPTGSGK
SLCYQFCAQQLPNLTLVISPLLALMKDQLAFLASKGIAAASIDSSLTYEQTQQVMRDIRD
KQTRILMVSVERFKNERFRQFLHSVPISLLVVDEAHCISEWGHNFRPDYLKIPQFCQAFS
IPQTLLLTATATEQVKRDMASRFALAPQQIVQTGFYRSNLDLSVIAVTEQEKNHHLVHYV
KHFTASDCVGIVYVTLQHTAEDVAQLLKTAGVNAQAYHAGMEQESRQSIQQQFMDNQVQV
IVATIAFGMGIDKSDIRFVIHYDLPKSIENYSQEIGRAGRDGQLSYCYTLANLDGLNTVE
NFVYGDTPEPESIADLLEIIATETDQGRWEVQELSLSTACNIRTLPLKTLFVQLELMDVI
KPSFAYFADFKYRFVEDKHVILNRFNPERQAFLNQIFEHTHFKKIWGQLDFDRLYQQYGS
ERQRVVAALEYLAEQQLIVLETKKITQVFTVNQQVLHSTLQRQQLTQQLSDYFSDNERKE
IVRISKLVAYFELDTCLSSALALYFDDHAAPQTCGHCSVCRGQIAVLSKQTLPALPEADN
IATLLAPLQQVVQDKSLPTLTIATQAKFLAGMVMPRFSRLKVKQFEGFGRFSAYRYQDIL
DALKKVNS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgacaacccataccccaattattgcacagggctcttcacgcttaaacgttgccgattta
catttacttttgcagcaacagtttggctttgctgagtttagagaagggcagcaacaggtc
atcgaaacgattttgtctggtcactccgcgttagcgattttccccactggttctggtaaa
tctttgtgttatcagttttgtgctcaacaactgcccaatttgacgttagtgatttcacca
ttattggcattaatgaaagatcagctggcttttttggccagtaaaggcattgctgccgcc
agtattgattcgagtttaacctacgagcaaactcaacaagttatgcgagatattcgtgac
aaacagactcggatattaatggtctcggttgagcgttttaaaaatgagcgctttaggcag
tttttacattctgtgccgatttcattactggtggttgatgaagctcactgcatttcagag
tgggggcataattttcgtcctgattatttaaaaattccgcagttttgtcaggcgttttca
atcccacaaaccttgttactaacggccacagcaacagaacaggttaaacgcgatatggcc
tcgcggtttgcattggcaccacagcagattgttcaaactggtttttatcgttcaaattta
gatttgtctgtgattgccgtgactgaacaagagaaaaatcatcatcttgtgcattatgta
aagcactttacggcgagtgattgcgtagggatagtgtacgttacgttacagcacactgca
gaagacgttgcccagctgttaaaaacggctggggttaacgcgcaggcgtatcatgcaggg
atggagcaagagtcacgacaaagtattcagcaacagtttatggataatcaagtccaggtg
atagtcgcgactattgcctttggtatgggaatagataaatctgatattcgctttgttatt
cattatgacttacctaaatcgatagaaaattacagtcaggaaatcggccgagcagggcgc
gatggacagctatcttattgctatactctggcaaacttggatgggttaaatacggtcgaa
aactttgtgtatggcgatacacctgagccagaaagcattgctgatttattagagattatt
gcgacagaaacggatcaagggcgctgggaagtgcaagagctatctttatctaccgcttgc
aacattagaacgctgcccttaaaaaccttatttgtgcagttagaactcatggatgtgatt
aagccaagttttgcgtattttgccgactttaaatatcgctttgttgaagacaaacacgtc
atacttaatcgctttaaccctgagcgccaggcatttttaaaccagatatttgaacatacg
cattttaaaaagatttgggggcaactggattttgaccgtttgtaccagcaatatggtagc
gagcgtcagcgggtagttgcagcgcttgaatatctagccgaacaacaattgattgtgctt
gaaacaaaaaaaattactcaagtatttaccgtcaatcagcaagtgttgcactctactttg
cagcgacagcaactgacgcaacaattatcggactattttagtgataatgagcgcaaagaa
attgtgcggataagtaagttggtcgcctattttgagctcgacacttgtttaagttctgca
ttagcgctgtattttgatgatcacgctgcgccacaaacatgtggccattgcagtgtttgt
cgagggcaaattgcggtattatctaaacagacgttgcctgcattaccagaggcagacaac
attgccactttacttgcaccattgcagcaagtggttcaagacaaatcgttacccactttg
accatagcaacacaggctaagtttttagctggtatggtgatgccaagatttagtcgattg
aaagttaaacaatttgaaggctttggccgttttagtgcttatcgataccaagacattctg
gatgctcttaagaaggtgaattcatga
DBGET
integrated database retrieval system
