Ruegeria sp. TM1040: TM1040_0003
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Entry
TM1040_0003 CDS
T00359
Name
(GenBank) DNA replication and repair protein RecF
KO
K03629
DNA replication and repair protein RecF
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TM1040_0003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_0003
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TM1040_0003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_21
AAA_23
AAA_15
SbcC_Walker_B
DUF4785_1st
ABC_tran
AAA_29
PepSY_2
Motif
Other DBs
NCBI-ProteinID:
ABF62736
RoseoBase:
TM1040_0003
UniProt:
Q1GKT0
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Position
2950..4023
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AA seq
357 aa
AA seq
DB search
MSHFRSHLRADLHLDTRPVAIHGNNGAGKTNILEAVSLFSPGRGLRRASAADMARQPEAL
GWKLRGVLQSSGQAYEVETSSEVGNARQVKIDNKSASQVALGRIARVVWLVPAMDRLWIE
GAEGRRRFLDRIALSFDPDHAEASLSYEKAMRERNRLLKDNVRDAAWYRVLEGQMAETGF
RIHQARMDAVARLTAAQAEAETAFPVAQLQLVQAEGDMPASAEALREMLDAGRMRDLTVG
RTLVGPHRSDLIGTFLAKGLPAKDCSTGEQKALLVSLILANARALQAQEGAAPILLLDEV
AAHLDAGRRAALYDEICALGTQAWMTGTGPELFQELGSRAQHLTVSDRGGTSEVTLQ
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacttccgctcgcatttgcgggcggatttgcatttggatacgcgcccggtcgcg
atccacggcaacaatggtgcgggcaagaccaatatccttgaggcagtatcgttgttttcc
ccggggcgggggctccggcgcgcctccgcggcagatatggcgcgccagccagaggccctg
ggatggaagcttcggggtgtgcttcagtcctccggccaggcctatgaggtggagacctcc
tctgaagttggtaacgccagacaggtcaagatcgacaacaagagtgcaagccaggttgcg
ctcgggcggatcgctcgcgttgtctggttggttccggcgatggatcgcttgtggatcgag
ggggctgaagggcggcggagatttctcgatcgcatcgcgctcagttttgatccggatcac
gctgaggcaagtctttcctatgaaaaagcaatgcgggagcgcaatcgcctgctaaaggac
aacgtccgggatgcggcatggtatcgcgtacttgaggggcagatggccgaaaccggcttt
cgcatccatcaggcccgtatggatgcggtggcacggctgacagctgctcaagctgaggca
gagaccgcatttccggtggcgcagttgcagcttgtgcaggccgaaggggatatgcccgcc
agtgccgaagcgctgcgcgaaatgctggatgctggacggatgcgcgatctgacggttggg
cgaaccctggtcgggccacaccgaagcgatttgattggcacctttttggccaaggggttg
ccagcaaaggattgctccacaggagagcaaaaggcgctgttggtctccttgatcctcgcc
aatgcgcgcgcgctgcaggcacaggaaggtgcggccccgattctgctgctggacgaagtg
gcggcgcatctggatgcggggcggcgggccgcgctctatgacgagatttgcgcgttgggc
acgcaggcctggatgacgggcacgggacctgagctgtttcaagaattgggctcccgcgcg
caacatttgaccgtgagcgatcggggcgggacaagcgaggttacactgcaatga
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