Ruegeria sp. TM1040: TM1040_0235
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Entry
TM1040_0235 CDS
T00359
Name
(GenBank) DNA-directed RNA polymerase subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TM1040_0235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sit03021
]
TM1040_0235
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_0235
Enzymes [BR:
sit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TM1040_0235
Transcription machinery [BR:
sit03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TM1040_0235
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TM1040_0235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
PTS_EIIA_1
Motif
Other DBs
NCBI-ProteinID:
ABF62968
RoseoBase:
TM1040_0235
UniProt:
Q1GK48
LinkDB
All DBs
Position
251905..256137
Genome browser
AA seq
1410 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLQYGQMMTEEEYMDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTLEREGMKGEGKIFGNLDEVQHAL
DAGEVHLHSKVTVRVPQIDEEGNEVFQRFETTPGRARLGSLLPKNAKAPFELVNRLLRKR
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDNKWTIVDDTRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKLTEAMMSTISAVKKAEDGSDMEPNSVY
MMAHSGARGSVTQMRQLGGMRGLMAKPNGDIIETPVISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREHDCGTERAITAETAVNDGEVVASLGERILGRV
AADDVKRPGTEEVLLAAGQLIDERMADTIEEAGVQSMRIRSPLTCESEEGVCAMCYGRDL
ARGTMVNSGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQEGKIVFENTN
TLTNANGEVLTIGRNMKLIIQDEHGEERSSHKLGYGTKLFVKEGQEVKRGDKLFEWDPYT
LPIIAEKPGTAKYVDLVSGLAVREETDDATGMTQKIVIDWRAAPKGSDLKPEIILVGDDG
EPVRNSLGNPLTYPMSVDAILSCEDGQKIEAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPADESMEAVEYMVPKGKHIPVVEGDFVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
ISDSGETTLLKGEHVDKQEFDAANEKALARGKRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTGGATQQVRHIAASRDNVVLEARRE
EAEAAAALAAPMADDAADADFLVETPESRD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcaccaacaacccgttcaacccgctgactccgcccaaggtctttgac
gaaatcaaagtctcgctggccagccccgaacggatcctgtcttggtcctacggcgagatt
aaaaagccggaaaccatcaactaccgtacgttcaagcccgagcgtgacggcctgttctgc
gcgcgtatctttggcccgatcaaagactacgaatgtctctgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgagaaatgtggtgttgaagttacccttcaaaaagtgcgc
cgcgagcgcatgggccacatcgaactggcggcacccgttgcgcatatctggttcctgaag
tcgcttccttcccggatcggcctcatgctggacatgaccctgcgtgatctggaacgtgtt
ctgtactttgaaaactacgttgtcatcgagccgggtctgactgacctgcaatacggccag
atgatgaccgaagaagagtacatggacgcgcaagacgcctatggcatggacgctttcacc
gccaatatcggtgcggaagcgatccgcgaaatgctggcggcgatcgatcttgaggcagaa
gccgagcacctgcgcgccgaactggccgaggccaccggcgaactgaagcccaagaagatc
atcaaacgtctgaaagtcgttgaatccttcctcgagtcgggcaaccgtcctgagtggatg
atcatgaccgtgatcccggttatcccgccggaactgcgtccgctggttccgctggatggg
ggccgttttgcgacctccgacctcaacgacctctatcgtcgtgtgatcaaccggaacaat
cgtctgaagcgactcatcgagctgcgcgcgcctgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatccgttgatgctctgttcgacaacggccgtcgtggtcgcgtcatcacc
ggtgccaacaagcgtccgctgaagtcgctctccgacatgctgaagggtaagcagggtcgc
ttccgtcagaaccttctcggtaaacgcgtcgacttctccggtcgttcggttattgtgacc
ggccccgagctgaagctgcaccagtgtggcctgcccaagaagatggcgctcgaactcttc
aagcccttcatctactcgcgtctggaggccaaaggtctgtcctccaccgtgaagcaggcg
aagaagctcgttgaaaaagaacgtcccgaagtttgggatatcctcgacgaggtgatccgc
gagcacccggtgatgctgaaccgcgcaccgacgctgcaccgtcttggtattcaggcgttc
gaacccacgctgatcgaaggtaaagcgatccagctgcacccgctggtctgttcggcgttc
aacgcggacttcgacggtgaccagatggccgtgcacgtcccgctgagccttgaggcccag
ctggaagcgcgcgtcctgatgatgtcgacgaacaacgttctgtcgcccgcaaacggtgcg
ccgatcatcgttccctcgcaggatatgatccttggtctctactacctcacgctggagcgt
gaaggcatgaagggcgaaggcaagatctttggcaacctcgacgaggtccagcacgcgctg
gacgcgggcgaggtgcatctgcactccaaagtgaccgtgcgggttccgcagatcgacgaa
gagggcaacgaagtcttccaacgcttcgagaccacgccgggccgtgcccgtctgggctcc
ttgctgccgaagaacgccaaggcaccgtttgaactggtgaaccgtctgctgcgcaaacgc
gaagttcagcaggtcatcgacaccgtctaccgttactgcggtcagaaagagtcggtgatc
ttctgtgaccagatcatgaccatgggcttccgcgaagcgttcaaggcgggcatctcgttc
ggcaaggacgacatggtgatccccgacaacaagtggaccatcgtcgacgacacccgcgat
caggtgaaagactttgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaggttgtcgatgcctggtcgaagtgtaacgacaagctcaccgaagccatgatgtcc
accatctcggcggtcaaaaaggctgaagatggctccgacatggaaccgaactcggtctat
atgatggcgcactccggtgcgcgtggctccgtgacgcagatgcgtcagctgggcgggatg
cgcggcctgatggcaaagccgaacggcgacatcatcgagaccccggttatctcgaacttt
aaagaaggcctcaccgttctggagtacttcaactccacccacggtgcgcgtaagggtctg
tcggacaccgctctgaaaacggcgaactccggttaccttacacgtcgtcttgtggacgtg
gcgcaggactgcatcgtgcgcgagcacgactgtggcaccgagcgtgcgatcacggctgaa
accgcggtcaacgacggtgaagttgtggcgtctcttggtgagcgtatcctgggtcgtgtg
gcggcagatgacgtcaagcgtccaggcaccgaagaagtcctgttggctgcaggtcagctc
attgacgaacgtatggccgacaccatcgaggaagctggcgttcagtccatgcgcatccgc
agcccgctgacctgtgaaagcgaagagggcgtctgcgccatgtgctatggccgcgacctt
gcacgcggcaccatggtcaactccggtgaggccgtcggcatcatcgcggcgcagtccatc
ggtgaaccaggtacacagctgacgatgcggaccttccacatcggcggcgtggcccagggt
ggtcagcagtccttcctcgaggcgtcccaggagggcaagatcgtgttcgagaacacgaac
acgctcaccaacgccaacggcgaagttctgaccatcggccggaacatgaagctgatcatt
caggacgagcacggtgaagagcgctccagccacaagctgggctacggtaccaagctcttt
gtgaaagagggccaagaggtcaaacgcggcgataaactgttcgagtgggacccctatacc
ctgccgatcatcgccgagaagccgggtaccgcgaagtacgtggacctcgtgtccggtctg
gccgtgcgcgaagaaaccgacgatgccaccggcatgacccagaagatcgtgatcgactgg
cgtgcggcaccgaaggggtctgacctgaagccggagatcatccttgtgggtgacgatggc
gaaccagtgcgcaactcccttggaaacccgctcacctatccgatgtccgtggatgcgatc
ctgtcctgtgaagatggccagaagatcgaagccggtgacgttgttgcgcgtatcccgcgt
gaaggcgcgaagacgaaggacattaccggtggtctgccgcgtgtggccgaactcttcgag
gcgcgtcgtccgaaggatcacgcgatcatcgcggaaatcgacggctatgtgcgctttggt
cgtgactacaagaacaagcgtcgtatctcgatcgagccggcagatgagtccatggaggcc
gtggaatacatggtgcccaagggcaagcacatcccggtggtcgaaggcgacttcgttcag
aagggcgactacatcatggacggcaacccggcgccgcatgacatcctctccatcatgggt
gtcgaggctctggcgaactacatgatcgacgaggtgcaggacgtctatcgcctgcagggt
gtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagtgggag
atctccgactctggcgagaccacgctcctcaagggcgaacacgtcgacaagcaggagttc
gacgctgcaaacgagaaggcgctggcccgtggcaagcgtcctgctcagggcgagccgatc
cttcttggtatcaccaaggcgtcgctgcagacccgctccttcatctccgcggcctccttc
caggagaccacacgggtgctcaccgaagcctccgtacagggcaagaaggacaagctggtc
ggcctgaaggaaaacgtcatcgtgggtcgtctgatcccggcgggtaccggtggtgccacc
cagcaggtgcgtcacatcgcggcctcgcgcgacaatgtggttcttgaggcccgtcgtgaa
gaagccgaagcggcggcagcccttgctgcgccgatggcggatgatgcggcggatgcggac
ttcctcgtggaaaccccggaaagccgcgactga
DBGET
integrated database retrieval system
