Ruegeria sp. TM1040: TM1040_2378
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Entry
TM1040_2378 CDS
T00359
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sit
Ruegeria sp. TM1040
Pathway
sit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TM1040_2378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sit03400
]
TM1040_2378
Enzymes [BR:
sit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TM1040_2378
DNA repair and recombination proteins [BR:
sit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TM1040_2378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
PriA_C
PriA_3primeBD
ResIII
PriA_CRR
Helicase_C
AAA_22
AAA_30
AAA_16
Imm49
zf-CHY
Motif
Other DBs
NCBI-ProteinID:
ABF65110
RoseoBase:
TM1040_2378
UniProt:
Q1GE06
LinkDB
All DBs
Position
complement(2497575..2499782)
Genome browser
AA seq
735 aa
AA seq
DB search
MSKAGDSPEFFAQGERVGVLTAQPLDRLLDYRAPEGGCFLGAFVEVPLGPRKVIGVVWGP
GAGDFDAAKLRSVIRVLDLAPMRAEMRGFLERAGQYTLTPMSMMLRLATRAPGLADPPSM
RKILRRGDREPDRITDARAKVLDVMQEYEGGAFTPSELSELAGVTTSVIKGLIKQGAIRE
EEAPRDLPFPPLDPDLPGKTLSEDQAAAAAALEAGVESGRYGTTLLKGVTGSGKTEVYLE
AVAACLRKGRQALVLLPEIALTAEFLKRVEARFGAVPAEWHSGVTMTERRRVWRMVGQGA
AQLVIGARSSLYLPFRDLGLIIVDEEHDTSYKQEEGVLYNARDLAVWRASLCQAQVVLAS
ATPSLETWANAEAGKYQRLDLTSRFGDSVLPEMRAIDMRNEELLPSTWISPTLKQAMKLR
LERGEQSLLFLNRRGFAPVTICRACGAQVACDNCDARMVEHRFMKRLMCHQCGETKPVPT
ECPSCKVEGKMAPVGPGIERLGEEAAALFPEARIAVLSSDLFGSARALKQRIEDIAAGEA
DIILGTQLVAKGHNFPLLTLVGVIDADLGLQGSDLRAAERTFQLMRQVAGRAGRAERRGE
ALMQSFQPEHPVIRAILSGDEESFWRAEAEQRQAAGVPPYGRMAGVILSGTDLAQVFDLG
GALARNDGPLRQVGAQLFGPAPAPIARVRGRHRVRLLVKADKGAPLQDAITRWIAPFKLK
GDLRLNVDIDPQSFL
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagcaggcgatagcccggagttttttgcccaaggcgagcgggtcggggtgctg
acagcgcagccgctggatcgtctgttggactatcgcgcgcccgagggcggctgctttctc
ggagcctttgtcgaggtgccgcttgggccgcgcaaggtgatcggcgtggtctggggtccg
ggcgccggtgactttgatgcggcaaagctgcgctcggtgatccgtgtactggatctcgca
ccgatgcgcgccgagatgcgcggctttctggagcgtgcaggtcagtatacgctcacaccg
atgtcgatgatgctccggctggcaacgcgcgcaccgggtctggcggacccgccttcgatg
cgcaagatcctgcggcgcggtgatcgtgaacctgaccgcatcacagacgcccgcgccaag
gtgcttgatgtgatgcaggaatatgagggcggcgcgtttaccccgtcagagctttctgag
ctggctggcgtgaccacttccgtcatcaaggggctgataaaacagggggcgatccgcgaa
gaagaagcgccccgggacctgccatttccccctcttgacccagatctgccgggcaagacg
ctctctgaagatcaggccgcagccgccgccgcccttgaggccggtgtggaatctgggcgc
tacggtacgacccttctcaagggggtgacagggtcgggcaagaccgaagtctaccttgag
gctgtggcggcctgtctgcgcaaggggcggcaagccttggtgcttttgccggagattgct
ctcactgcagagttcctgaaacgcgtggaggcgcggtttggggcggttccggccgaatgg
cactctggcgtgacaatgaccgaacgccgccgcgtctggcgcatggtggggcagggggcg
gcgcaactggtgattggtgcgcgttcctctctctatctgccgttccgcgatctggggctg
atcatcgtcgatgaagagcacgacacgtcttataaacaagaagaaggggtgctgtataac
gcgcgggatctggcggtctggcgcgcgtccttgtgtcaggcgcaggtggttcttgcgtcg
gccaccccgagccttgaaacctgggcaaacgcggaggccgggaaataccagcgccttgat
ctgacatcgcgctttggcgactcggtgctgccggagatgcgcgcgattgatatgcgcaat
gaggagctattgccctccacgtggatttcgccgacgctcaaacaggccatgaaactgcgc
ctcgaacggggcgaacagtcgcttttgttcctcaatcggcgcggctttgctccggtgacg
atctgtcgggcctgtggtgcgcaggtggcctgcgacaattgcgatgcgcgaatggtcgag
catcgcttcatgaaacgcctgatgtgccaccaatgtggtgaaaccaaacccgtgccaacc
gaatgcccctcctgcaaggtcgagggcaaaatggcccccgttggccccggtatcgaacgt
ctgggcgaagaagcggcagccctctttcccgaggcgcgcatcgcggtgctgagctctgat
ctctttggatctgcacgcgcgctcaaacagcggatcgaggatattgccgcaggtgaggcc
gacatcattctgggtacgcaattggtcgcgaagggacacaatttccccctgctcacgctt
gtgggggtgatcgacgctgatctcggcttgcaaggctctgacctgcgtgcggcggagcgg
acctttcagctcatgcgtcaggtggcggggcgcgctgggcgcgctgaacgcaggggcgag
gccctgatgcagagctttcagcccgaacatcctgtgatccgcgcgatcctatcgggcgat
gaggagagcttctggcgcgcagaggcagaacagcgacaggcagcgggggtgcccccctat
ggacgtatggcgggcgtgatcctgtcggggaccgatctagcgcaggtctttgatcttggc
ggggccttggcacgcaacgatggccccttgcggcaggtgggcgcgcagctttttggtccg
gcgcccgccccgattgcgcgcgtcagggggcggcaccgtgtgcggctcctggtgaaagcc
gacaaaggcgcgccccttcaagatgcgatcacccgctggatcgcgccattcaagctcaag
ggcgatctgcgcctcaatgtggacattgatccacagagcttcctttag
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