Shewanella japonica: SJ2017_1842
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Entry
SJ2017_1842 CDS
T04959
Name
(GenBank) Phosphomethylpyrimidine synthase
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
sja
Shewanella japonica
Pathway
sja00730
Thiamine metabolism
sja01100
Metabolic pathways
sja01240
Biosynthesis of cofactors
Module
sja_M00127
Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP
Brite
KEGG Orthology (KO) [BR:
sja00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
SJ2017_1842
Enzymes [BR:
sja01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
SJ2017_1842
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
zf-CRD
Motif
Other DBs
NCBI-ProteinID:
ARD22150
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Position
2207254..2209272
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AA seq
672 aa
AA seq
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MSNRRQTREQAQAFIDTLKPLQHPNSEKIYLTGSRDDLRVGMRQIHQTDTIIGGNDENPV
TESNPPIKVYDCAGSYSDPDAKINVRLGLNKFRQAWIEEREDTEQLKGVSSNFTQQRLAD
DGLDHLRFEALVSPKRAKTGKCVTQMHYARQGIITPEMEYIAIRENMAREQVTDKILTQK
AQGETFGASIGQPITAEFVRSEVARGRAIIPLNINHPEAEPMIIGRNFLVKVNANIGNSA
VTSSIEEEVEKLVWSTRWGADTVMDLSTGRYIHETREWIIRNSPVPIGTVPIYQALEKVN
GVAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRLTGIVSRGGSIMAKWCL
SHHKESFLYEHFREICEICAAYDVSLSLGDGMRPGSIADANDEAQFAELETLGELVKVAW
EYDVQTIIEGPGHVPMQLIKVNMEKQLAHCDEAPFYTLGPQTTDIAPGYDHFTSGIGAAQ
MAWYGVAMLCYVTPKEHLGLPNKEDVKQGLIAYKIAAHAADVAKGHPGAQIRDNALSKAR
FEFRWEDQYNLGLDPDTARAYHDESLPQESAKVAHFCSMCGPKFCSMKITQEVRDYAAKQ
EREAGNNVVSQTISVVDATAFSASQVNDPQHIEAAMAQKSAEFKATGSEIYQPLNKTSDK
LEMELESESVEG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatcgtcgtcaaacccgtgaacaagcccaagcgtttattgatacgctaaaacca
ctacaacatcctaactctgaaaaaatttatctgacaggctctcgagatgatttgcgagtc
ggcatgcgccaaattcatcaaacggacaccattattggtggcaatgacgagaatccggtt
accgagtcaaacccaccaataaaagtttatgattgcgcggggtcttattcagatcctgat
gccaaaattaatgtccgtctaggtttgaacaaatttagacaagcatggattgaagaacgt
gaagatactgagcagcttaaaggggttagttctaattttactcagcaaagattagctgac
gatgggttagatcatttacgttttgaggctttagtgtctcctaaacgcgccaaaacgggc
aagtgtgttacgcagatgcattatgctcgacaggggattattactcctgaaatggaatat
atcgcgattcgtgaaaacatggctcgggagcaggttaccgataagatcttaactcaaaaa
gctcaaggtgaaacctttggggcaagtataggtcagccaataactgctgaatttgttcgt
tcagaagtggctcgtggtagagcaattatcccgcttaacatcaatcatcctgaagctgaa
ccaatgatcattggccgaaattttttggttaaagtgaatgccaatattggcaactcagcg
gtgacctcgtctattgaagaagaagtagaaaaacttgtctggtcaactcgatggggcgcc
gatacggtgatggatttatccactggtcgttatattcatgaaacccgtgaatggatcatc
cgtaattcgccagtgccgattggaactgtacccatttatcaagcgcttgaaaaagttaat
ggcgttgctgaagatttaacatgggaagtgtttagagatactttgattgagcaagcagag
caaggggttgattacttcacgattcatgctggagtattgcttcgctatgtgccaatgact
gcaaaacgacttactggcattgtttctcgtggtggttcgatcatggcgaaatggtgttta
agccatcataaagaaagttttttatacgagcattttagagaaatttgtgagatttgcgcc
gcatatgacgtgtcactgtcactaggtgatggcatgcgcccaggcagtattgctgatgcc
aatgatgaagcgcaatttgcagaattagaaacgttaggcgaattggttaaagtggcatgg
gagtatgatgttcaaaccattatcgaaggtcctgggcatgtaccaatgcagctcattaaa
gtgaatatggaaaaacaattggctcactgtgatgaagcgccgttttatactttaggtcct
caaactacagatatagctccaggatatgatcactttacgtcaggtattggtgctgcgcaa
atggcctggtatggcgttgcaatgctgtgttatgtcacgcctaaagagcatttaggtctg
ccaaataaagaagacgttaagcaagggttgatcgcttataaaattgcggctcatgctgcg
gatgttgccaaggggcaccctggcgcacaaattcgtgataatgccttatctaaagcccgt
tttgagtttcgttgggaagatcaatataacctaggtttagaccctgatacagcaagagcg
tatcacgatgaatcattgccacaagagtccgctaaagtcgcgcacttttgctcaatgtgt
ggccctaaattctgctcgatgaaaatcacgcaagaagtacgagattacgctgctaaacaa
gaacgtgaagcaggtaataacgtggtttctcaaaccatttctgtggtagatgcaactgca
tttagtgcttctcaggttaatgatcctcagcatattgaagcggccatggcacaaaagtcg
gctgaatttaaagccacagggtcagaaatctatcaaccactcaataagacgagcgataag
cttgaaatggaattggaatctgagtctgttgaggggtga
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