Salimicrobium jeotgali: AAV35_013410
Help
Entry
AAV35_013410 CDS
T04359
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sje
Salimicrobium jeotgali
Pathway
sje03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sje00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AAV35_013410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sje03400
]
AAV35_013410
Enzymes [BR:
sje01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AAV35_013410
DNA repair and recombination proteins [BR:
sje03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AAV35_013410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKG03261
UniProt:
K2FIQ9
LinkDB
All DBs
Position
complement(2638604..2642137)
Genome browser
AA seq
1177 aa
AA seq
DB search
MNGIKQYLRSHDDIASVIEGVSSGIKEQMVAGVSGTSRSMLVSVVQEAVKRPVLLVTHQL
HQAQQLYEDLQEWADDCPVHLYPVNELIASEIAIASPELRSQRIDALDEWLHEDSGIFIA
PVAALKRIMPPVSYWKEAQLHFDMGEEIDLDHTLSKLVKIGYERTGMVSSPGEFSMRGGI
LDVYPLTEEYPVRIELFDTEVDSIRTFDVESQRSKEKLGSTVIRPATEMLLKPEDYARAL
NRLEDAYQDTVGKWSDQEAKQRLFEEISHDKERLEQQERFENMYKYMEFFYEETYSLLDY
LSQDGIVVFDEMSRIQETAQRLDEEEGEWHRNLLENGRTVRDLQVSHDWHDIWAKTTHQR
IYLSVFMRHIPSTQPGNVVNITGRQMQEFHGQMNLLKNEMDRWKKQDFSVVIAASGEQRK
EKVQAVLDDYEMEAVVGEEDVTLPVSTPVIIDSALRAGFEWPLHKIAVLTERELFKKRAP
KRKKKEKISNAERIKSYQELNVGDYVVHSHHGIGKYLGIETLESSGTHNDFLMVQYSGND
KLFVPVDQIDLIQKYVGSEGKEPKIYKLGGSEWAKVKRRVQSSVEDIADDLIEIYAEREA
SRGHSFEQDGEMQKEFEEAFPYEETPDQVRCIEEIKHDMERVRPMDRLLCGDVGYGKTEV
ALRAAFKAIAEGKQVAILVPTTILAQQHYETLTERMQDFGVNIGLMSRFRTRKQQKDNTD
GLRKGLVDIVVGTHRLLSKDVEFKDLGLLIVDEEQRFGVKHKEKIKQLKADVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVIEYNPVFIREAVEREMSRDGQVFFLYN
RVDSIDRMASHISELVPDARVAVAHGQMNETELENIMFAFLEGEYDVLVSTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQIRGRVGRSNRVAYAYFTYQQNKVLTEIAEKRLEAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDMYSQMLKDAIEAKRQGKTPEAIQP
FQPELQLDIDAYLPGDYISDEKQKIDMYKRFQTIESEEDIQDLRDELIDRFGDYPEQVEK
LFTVSVLKQQAKQNRIEEITEQKHMIKLVMEKEQSQGIDGSRLFEMANQYGRMVQLGTDE
NQLTIRFRLDRNTKPRRYELIEEFLRRLPSMMREDVV
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaataaaacaatatttacgttcccatgatgatattgcttcagttatcgagggg
gtcagtagcggtataaaagaacagatggtagccggggtttcggggacgtcaagaagcatg
ctggtttccgtcgtgcaggaagcggtgaaacggccggtccttctcgtcacccatcagctg
catcaggctcagcagctgtatgaagacctgcaggaatgggcagacgactgcccggtacat
ctctatccggtcaacgaactgatcgcatcggaaatcgctatcgccagccccgaactgaga
agtcagcggatcgatgctctggacgaatggcttcatgaagactccggtattttcatagca
cctgtggcggctttaaaaagaataatgccgcctgtttcgtattggaaagaagctcagctt
cattttgacatgggagaagaaatcgatcttgaccatacgttgtcgaaacttgtgaaaatc
ggatatgaacgtacgggcatggtctcttctccgggtgagttttcgatgcgcggggggatt
cttgacgtttatcccctgacggaggaatacccggtccggattgagctttttgatacggaa
gtggactcgatccgtacctttgatgtcgaatcccaacgctcaaaagaaaagcttgggagc
acggtgatcagaccggcgacggaaatgcttctgaaaccggaagattacgccagggctctg
aacagactcgaagacgcctatcaggacacggtcggcaagtggtcggaccaggaagcgaaa
cagaggttgttcgaagagatctcgcatgacaaggaacggctggaacagcaggaacgcttc
gagaatatgtacaagtacatggaatttttctatgaagagacttacagcctgctcgattac
ctgtcgcaggacgggatcgtcgtgtttgatgaaatgagcagaattcaggaaacagcacag
cgactggatgaggaggaaggagaatggcaccggaacctgcttgaaaacgggcgtaccgtg
agagacttgcaggtgtcccatgactggcatgatatatgggcgaaaacgactcatcagcgc
atttacctgtccgtattcatgagacatatcccctccactcagcccgggaatgtcgtcaac
ataacagggcggcagatgcaggaattccacggccagatgaacttactgaaaaatgagatg
gatcgctggaagaagcaggacttctcggtcgttatcgcggcttcgggagagcagcggaaa
gagaaggtccaggcggttctcgatgattatgaaatggaggcggtagtaggggaagaggat
gtaaccctgccggtgagcactccggtgatcatcgacagcgcactccgggccggtttcgaa
tggccgctccacaaaatagctgtattgaccgaaagggaactgtttaaaaaacgggcacct
aaacggaaaaagaaagaaaagatttcaaacgccgaacggattaagagctatcaggaactg
aacgtcggcgattacgtcgtccactcccaccacggtatcggtaagtacctcggcatcgaa
acgctggagtcgagcgggacgcacaatgatttcctgatggtgcaatactccgggaatgat
aagctgttcgtgccggtggatcagatcgacctgatccagaaatatgtcggttctgaagga
aaagagcctaaaatttataaactcggcggctccgagtgggcgaaagttaagcggcgcgtc
cagtcttcggttgaagatatagcggatgaccttattgaaatttacgccgagcgtgaagcg
tccaggggtcactcctttgagcaggacggggaaatgcagaaagagttcgaggaagctttt
ccttacgaagagactcccgatcaggttcgttgtatcgaagaaatcaaacacgacatggaa
cgggtgcgcccgatggaccgccttctatgcggggatgtcgggtacgggaaaacggaagtg
gctctccgtgccgctttcaaagcgattgcggaaggaaagcaggtggcgatacttgtgccg
actacgatccttgcccagcagcactacgaaacgctgacggaacgtatgcaggatttcgga
gtgaacatcggtctgatgagccgcttccgtacgagaaagcagcagaaggataatacggac
ggactccgaaaagggctggttgatattgtagtgggaacgcatcgtcttctgtcgaaagat
gtcgagttcaaagatctcggtctgcttatcgttgatgaagagcagcgttttggtgtgaag
cacaaagagaagatcaaacagctgaaagcggacgtggacgttctgactctcacggctact
cccataccgcggacgctgcacatgtccatgctcggagtacgggacctttccgttatcgaa
acccctccggaaaacaggtttcccattcagacgtacgtcatcgagtacaatccggtattt
atacgggaagcggtggaacgcgagatgtcgcgggacggtcaggtcttcttcctgtacaac
cgggtggacagcattgaccggatggcttcccacatatccgagctcgtgccggatgcgaga
gtcgcagtagctcacggtcagatgaatgaaacagagcttgagaatattatgttcgccttt
ctggaaggggaatatgacgttctcgtaagtactacaatcattgaaacaggcgtggacatc
cctaacgtaaatacgcttatcgtatatgacgcggacagaatggggctcagccagctttat
cagatacgcgggcgcgtgggccggtccaaccgggtcgcttacgcttatttcacctatcag
cagaacaaggtgctgacggaaatcgcggaaaaacgtctggaagcgatcaaagagttcacg
gagctcggatccgggttcaagattgccatgcgtgatttgtcgatccggggagcagggaac
ctgctcggtgcccagcagcacggcttcatcgattctgtcgggttcgatatgtattcacag
atgctgaaggatgcgatcgaagcgaaacgtcaggggaaaacgcccgaggccatacagccg
ttccagcctgaactccagctggatatcgacgcttaccttccgggtgattacatctcggat
gagaaacagaagatcgacatgtataaacgttttcagacgattgaatcggaagaggatatc
caggatcttcgtgatgagcttatcgaccgcttcggagactatccggaacaggtggagaaa
ttgttcacagtttccgtgctgaagcagcaggcgaaacaaaaccgtattgaagaaatcacg
gaacagaagcacatgatcaaactggtgatggaaaaagaacagagccagggcatcgacggt
tcccggctgttcgaaatggccaaccagtacggacggatggtgcagcttggtacggacgag
aaccagctgacgatccgcttccgtctggacagaaatacaaaaccgagacgctacgagctt
atcgaggaatttctgagacgccttccttctatgatgagggaagatgtcgtgtaa
DBGET
integrated database retrieval system
