Shewanella khirikhana: STH12_03881
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Entry
STH12_03881 CDS
T06711
Symbol
trmA
Name
(GenBank) tRNA/tmRNA (uracil-C(5))-methyltransferase
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
skh
Shewanella khirikhana
Brite
KEGG Orthology (KO) [BR:
skh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
skh03016
]
STH12_03881 (trmA)
Enzymes [BR:
skh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
STH12_03881 (trmA)
Transfer RNA biogenesis [BR:
skh03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
STH12_03881 (trmA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_15
Methyltransf_4
MTS
Methyltransf_31
Methyltransf_11
Cons_hypoth95
PrmA
Met_10
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
AZQ12933
UniProt:
A0A3Q9E7X0
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All DBs
Position
complement(4380328..4381431)
Genome browser
AA seq
367 aa
AA seq
DB search
MNPQVMDPQAYEQQLEQKSHALTEAFAHYNPPALEVFASTPANYRMRSEFRVWHDGDDLF
YCMFDNVAKEKVRTDQFLPASELINQMMLALMEELRPNRALRHKLFQVDFLSTLSGEILV
SLLYHRQLDDLWLAEARELKARLSNHFKVDIIGRARKQKFCLDRDFVVETLNVNGKPLHY
KQVENSFTQPNAGVAVKMLEWAIDATKGSQGDLLELYCGNGNFSIALAENFGKVLATELA
KPSVEAAQYNIQINGVKNLDIIRMSAEDFTEAMKGEKRFNRLGDIDLNSYQCNTIFVDPP
RAGLDEGTVKLVQGYENILYISCNPETLNDNLKVLSETHDIVRFALFDQFPYTHHTEAGV
MLKRRQA
NT seq
1104 nt
NT seq
+upstream
nt +downstream
nt
atgaacccacaagtcatggatccccaagcctacgagcagcagctcgaacaaaagagccat
gctctgaccgaggcgtttgcccactataatccgccggcgttggaggtgtttgcctcgact
cctgctaactaccgcatgcgcagcgagttccgggtctggcacgatggtgatgacctgttt
tactgcatgttcgacaatgtagccaaagaaaaggttcgtaccgaccagtttttaccggca
agtgaactcatcaaccagatgatgctggcactgatggaggaactgagaccgaatcgggcg
ctgcgtcataagctgttccaggtcgacttcctgtctaccttaagcggcgaaatcctggtg
agcctgctttaccatcgtcagctcgatgacctgtggcttgccgaagcccgcgagttgaaa
gccagactctcaaaccatttcaaggtggatatcatcggccgtgcccgcaagcagaagttt
tgcctcgaccgcgactttgtggtggaaaccctcaatgtgaacggcaaaccactgcactac
aagcaggttgaaaacagcttcacccagcccaacgccggtgtggccgtgaagatgctggag
tgggccatcgatgctaccaaaggtagccaaggcgatttgttggagctgtactgtggtaac
ggcaacttctccattgctctggccgagaacttcggcaaggtgcttgccaccgaactcgcc
aaaccctcggttgaagctgcccagtacaacattcaaatcaatggcgtgaaaaatctcgac
attatccgcatgtcggcagaagactttaccgaggcaatgaaaggcgaaaaacgcttcaac
cgcctgggtgatattgacctcaacagttaccagtgcaacaccatctttgttgacccaccg
cgggctggcctggatgagggcacggtgaagctggtgcagggctatgagaatattctctat
atctcctgtaacccagagaccctgaacgataacctcaaggtactcagtgaaacccacgac
atagtccgttttgcgctgtttgatcagttcccttatacccaccacaccgaagccggtgtg
atgctaaagcgccgccaggcataa
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