Saccoglossus kowalevskii (acorn worm): 100372513
Help
Entry
100372513 CDS
T04123
Name
(RefSeq) probable ATP-dependent RNA helicase DDX23-like
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
sko
Saccoglossus kowalevskii (acorn worm)
Pathway
sko03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sko00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100372513
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sko03041
]
100372513
Enzymes [BR:
sko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100372513
Spliceosome [BR:
sko03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100372513
Complex C
U5 SnRNP specific factors
100372513
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
100372513
NCBI-ProteinID:
XP_006814070
LinkDB
All DBs
Position
Un
AA seq
770 aa
AA seq
DB search
MDLQFRSRDRDRIRERDRGSDRNWDRDRRDKDRDRFRDRDHDRDRRDRDRRDRDRDRGRQ
RSRSPHRSSRDSRSAKVVKEEDDEDKEKKEPLSLDEVIARKKAEQEAMSKPKFLTKEERA
KLALAKRQKDVEEQRRKSDIDRKKQMDFQKQAQMSYEDPYERERRERREKRERERERDMD
EDEREKAKQERDGEKELQSIKDRYLGMVKKKKRIRRLNDRKFVFDWDPTEDTSQDYNPLY
KEKHQIQLYGRGHIAGIDLKAQKKDKCKFYGELLEERRTIQEKEQELTRQKKEKQKEAKQ
RWDDRHWSQKTIEEMQERDWRIFREDYNIATKGGRIPLPIRSWTEAGLPDYIIDVIDSMG
YKEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLIPLLVWISSLPKIARQEDVDQGPY
AVILAPTRELAQQIEAETINFGKPLGIRTVSIIGGISREDQGFKLRMGCEIVIATPGRLI
DVLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQHILEYLPVSNQKPDTDDAEDHDKLLA
NFASKHKYRQTVMFTATMPPPVERIARNYLRRPAVVHIGSVGKPVDRVEQVVYMVKQQEK
RQKLVHLLEAGFEPPVMTFVNQKKGCDVLAKSLEKMGYNATTLHGGKSQEQREFALASLK
NGDKDILVCTDVAGRGIDIKDVSMVINYDMAKNIEDYTHRIGRTGRAGKTGLAVSLVTPD
DKMVMYDLKHCLLASPASTCPPELANHPDAQHKPGTVMSKKRKEETLYVN
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggatttacagttcagatctagggatagagacaggataagggaaagggaccgtggctct
gataggaattgggaccgtgaccgcagagacaaggatcgggacaggtttagggacagagat
catgacagagacagaagggacagagacaggagagatagagatagggacagagggcgacag
aggtcaagatcgccccacagatcatcaagagactctcggagtgcaaaagtagtgaaagag
gaggatgatgaagacaaggaaaagaaagagccactgtctttggatgaagttattgcgagg
aaaaaagcagaacaggaagctatgtcaaagcccaagtttctgactaaagaagagagggcc
aaacttgctttagctaaaagacaaaaagatgtggaagagcaaagaagaaaatcagatatt
gatagaaaaaaacaaatggattttcagaaacaggctcagatgtcatacgaagatccttat
gaacgggaacggcgtgaaaggagagaaaaaagagaaagagagcgtgaacgagatatggat
gaggatgaaagagaaaaggccaaacaggaaagagatggggagaaagaattacagtctatc
aaagatcgttatctagggatggtgaagaagaagaaaagaataagacgtctcaatgatcgt
aaatttgtttttgattgggatcccacagaagacacatcacaggactacaatccattgtac
aaagaaaaacaccagatacagttgtatgggcgtgggcacattgctggtattgatctgaaa
gcacagaaaaaagacaagtgcaaattttatggagagttattggaagagagaagaactata
caagagaaagaacaggaattgacaagacaaaagaaagagaaacagaaggaggctaaacag
aggtgggatgacagacattggtcacagaaaaccattgaagaaatgcaagaacgtgattgg
cgtatttttcgtgaagattacaacattgctacaaagggtggccgtatacccttacctatt
cgtagttggacggaagctggattgcctgactacattattgatgttattgattctatgggt
tataaggaacccactcctattcagcgacaggcaatccctattggtttacagaaccgtgat
gttatcggtgtagctgagactggtagcggtaaaactgcagctttcctaatacctctatta
gtgtggatctcatcactgccaaaaatagctagacaagaagatgttgatcaagggccatat
gcagttattcttgctcccacccgtgaattggctcaacagattgaagctgaaacaattaac
tttggaaaaccacttggtattcgtaccgtgtccattattggtggtatctctcgtgaagat
caaggattcaaactacgtatgggttgtgaaattgtaatagctactccaggtagattgatt
gatgtcttggagaatcgttatcttgttcttaatcagtgtacgtatgtagtacttgatgag
gctgatcgtatgattgacatgggttttgaacctgatgtacaacatattttggagtatctt
cctgttagcaaccaaaaacctgacactgatgatgctgaggatcatgataaactgttagcg
aactttgcgtccaaacacaaatacagacaaactgtcatgtttacagccaccatgccccca
cctgttgaaagaatagctcgtaattatctgcgaagaccagccgtagtacatattggctca
gttggtaaaccggttgacagagtggaacaagttgtttacatggttaaacaacaggagaaa
aggcaaaagcttgttcatttgctggaggctggatttgaacctccagttatgacgtttgtt
aatcaaaagaaaggatgtgacgtgttggcaaaatcactggaaaagatgggatataatgca
acaaccttgcatggtggtaagagtcaagagcagagagagtttgcattggccagtcttaaa
aacggtgataaggatattctagtttgtactgacgtcgctgggcgtggtattgatatcaaa
gatgtttccatggtgatcaattatgatatggctaaaaacatagaagattatacccatcgt
attggtcgtactggtcgtgctggaaaaactggacttgctgtgtctctagtgacacctgat
gacaaaatggtgatgtatgatttgaaacattgtctgcttgctagtcccgcatcaacgtgc
ccaccagagttagccaatcaccctgatgcccagcataaaccaggaacagttatgtctaaa
aagagaaaagaagaaactctttatgtgaattga
DBGET
integrated database retrieval system
