Sulfurimicrobium lacus skT11: SKTS_12400
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Entry
SKTS_12400 CDS
T06796
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
slac
Sulfurimicrobium lacus skT11
Pathway
slac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SKTS_12400 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slac03019
]
SKTS_12400 (rhlE1)
Enzymes [BR:
slac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SKTS_12400 (rhlE1)
Messenger RNA biogenesis [BR:
slac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SKTS_12400 (rhlE1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BCB26354
UniProt:
A0A6F8V9L9
LinkDB
All DBs
Position
complement(1259718..1261103)
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AA seq
461 aa
AA seq
DB search
MTFEDLGLRPEILRAVSDQGYTEPTPIQAQAIPVVLQGRDIMAGAQTGTGKTAGFTLPLL
HRLATHASTSTSPAKHPIRALILTPTRELAAQVEESVRTYGKYLPLKATVIYGGVNMNPQ
IDALRAGVDIVVATPGRLLDHVQQKSINLSKVEFLVLDEADRMLDMGFLPDLRRIMSLLP
AQRQSLLFSATFAEEIKRLSDSLLRDPVLIEVAARNTAAENVTQVAHPVEQARKRELLSH
LIKTQDLRQVLVFARTKHGADRLAHQLERDGILAVAIHGDKSQPQRTKALSDFKEGAVRV
LVATDVAARGIDIDQLPHVFNFEMPNSPEDYVHRIGRTGRAGSQGDAISLVSEEEMRMLG
EIERLIKREIPKVVVAGFEPGSTPRSEAPSRERGRERTPPRRPELPPAAEHHAQRAPSEG
VPKPAANNHHLKQPMGHAASHGKRPQRQVAALLGGLGRKGD
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgaagatcttgggctacgccccgaaattctgcgcgccgtctccgaccagggc
tacaccgaaccgaccccgatccaggcacaggccatccccgtggtcctgcaaggccgcgac
atcatggccggcgcccagaccggcaccggcaagaccgccggtttcaccctgccgctgctg
caccgcctggccacgcatgccagcaccagcacctcgcccgccaagcacccgattcgcgcc
ctgatcctcacccccacgcgcgaactcgcggcccaggtcgaggaaagcgtgcgcacctat
ggcaaatacctgccgctcaaggccaccgtgatttacggcggcgtcaacatgaatccgcag
attgatgccttgcgcgccggcgtggacatcgtggtggccacgcccggccgcctgctggac
cacgtgcagcaaaagagcatcaacctctccaaagtcgaattcctcgtgctggacgaagcc
gaccgcatgctggacatgggcttcctgcccgacttgcgccgcatcatgagcctgctaccg
gcgcagcgccagagtttgctgttctcggccaccttcgccgaggaaatcaagcgcctgtcc
gattccctgctgcgcgacccggtgctgatcgaagtggcggcccgcaataccgccgccgaa
aacgtcacccaggtggcgcatccggtggaacaggcgcgcaagcgcgaactgctgtcccac
ctgatcaaaacccaggatttgcgccaagtgctggtatttgcccgcaccaagcacggcgcc
gaccgccttgcccaccagctggagcgcgacggcatactggcggtggcgattcacggcgac
aagagccagccgcaacgcaccaaggcattgtccgacttcaaggaaggcgcggtacgggtg
ctggtggcgaccgacgtggcggcgcgcggcatcgacatcgaccagctgccccacgtattc
aatttcgaaatgcccaattcgccggaagactacgtgcaccgcatcgggcgcaccggccgc
gccggcagccagggcgacgcgatttcactggtgagcgaagaggaaatgcgcatgctgggc
gaaatcgaacgcctcatcaagcgcgagatccccaaggtggtcgtggcgggtttcgaaccg
ggcagcacgcccaggagcgaagcgccgtcgcgggaacgcggtcgtgaacgtactcccccg
cgccgtcctgaattgccgcccgccgcggaacaccatgcccagcgcgcgccgagcgaaggc
gtacccaaaccggcggccaacaaccatcacctcaagcaacccatgggccacgccgcctct
cacggcaagcgcccgcagcggcaggtggcggcactgttgggcggcctgggacggaaaggc
gactag
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