Stenotrophomonas sp. LM091: BIZ42_05115
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Entry
BIZ42_05115 CDS
T04630
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
slm
Stenotrophomonas sp. LM091
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_05115
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BIZ42_05115
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BIZ42_05115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
AAA_22
AAA_19
AAA_30
nSTAND3
AAA_23
ResIII
T2SSE
NACHT
SRP54
AAA_25
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AOX61630
UniProt:
A0A1D8Y7T5
LinkDB
All DBs
Position
complement(1159726..1163829)
Genome browser
AA seq
1367 aa
AA seq
DB search
MSAIEKPHAARLAQQQAAINGAMSRDRGRLLGMLSRWRAKPADAGLAAAFEQALQASVQR
REARALNQPAITLDEQLPIAREAEAITALIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
TAGMIGCTQPRRIAARAVATRVAQELQSELGTTVGYQVRFTDRVGDDTRIKFMTDGILLA
EISSDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLKKRQDLKLIVTSATIDTSRFAQH
FDDAPVISVEGRTFPVDVRYRPLEGEGGGDADGGRDGERTVNDAVVAAVDEITRIDPRGD
ILLFFPGEREIRDAHQALERRKYRGTDVLPLYARLSVKDQDLVFNPGSNRRIVLATNVAE
TSLTVPRIRYVIDPGFARIKRYSPRQKLDRLHIEAVSQASANQRKGRCGRVSEGICYRLY
SEADFQSRPEFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAIADGWQQLGEL
GAVDAERRLTPIGRQMARLPVDVKLARMLVAAQAQGCLRPMLVIASFLGIQDPRERPPEA
RAAADNAHALFADGRSEFVGVLRLWDGYRQAHEDLTQSKLRDWCGRHFLGFLRMREWREL
HRQLRVLCEELGWNEEPAETSLAPLLAGSSAPAPARDDEARIKATRGQQHRAARLAREGK
SEPALVETKAAPGNGADPEARSAFSDKVRAAAYQTLHRALIAGLPTQIGHRSDKGDFLAP
RQRRFLPFPGSALAKRPPPWLLTATLLDTQKIWGLTNAAIEPDWVINELPHLLLRKHFDP
HWSRAQGQVLASEQISLFGLVLAPKKPVHYGRIAPGEAHDIFVRQGLVTGEINTRAGFVA
DNLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAEIHSAMGLDTWWKALAPEKRRA
LSWTLADLLPGEGSDAERYPRYLPLGDARLALHYTFEPGAEEDGVTLEVPLHLLNALDPA
RLSWLAPGFVADKAAALIRSLPKAMRRNYVPAPDFGRAFAEAFAEPTADDIRGELARFLS
RATGAKLAATDFDEASLEPHLRMNLRLRDAGGKVLATSRDLEALRARFGDKAGEAFAARA
GRALAAEGLRDFPATPIPLQVPGEAGVPAYPALVDQGETAALKIFADRNEALEQHPLGVR
RLMEIALADKAKQARKQLPVPPKTGLLYAAIESQERLRGDLVDAAMNAVLADGLGDIRDP
AAFAKRSAEAGKALFGEAMARLKLAENILAHVAELKPQLEAPLMGWARGNLDDMEQQLAA
LVHPGFLRDTPADALAQYPRYLRAMILRTERAKRDPPRDQARMLELRPFVEALAQADARG
LRQRPQWQDLRWDLEELRVSLFAQELGARTGISAKKLAQRVAALQKA
NT seq
4104 nt
NT seq
+upstream
nt +downstream
nt
atgagcgctatcgaaaaaccacatgcagcacgcctggcccagcagcaggccgcgatcaac
ggggccatgagccgcgaccgcggtcgtttgctggggatgctctcgcgttggcgggccaaa
ccggcggatgcggggctggcggcggcgttcgagcaggccttgcaggcgtccgtgcagcgc
cgtgaagcgcgtgcgctgaatcagccggccatcactctggacgagcagctgccgattgcg
cgtgaagccgaggccatcaccgcgctgatccgcgaccatcaggtcgtggtgatcgccggt
gagaccggctcgggcaagaccacccagctgcccaagctgtgcctggccgccggccgtggc
accgccggcatgatcggctgcacgcagccgcggcggattgccgcacgtgcggtggccacg
cgtgtcgcgcaggagctgcagtccgaactgggcaccaccgtgggttaccaggtgcgcttc
accgaccgtgtcggtgacgatacccgcatcaagttcatgaccgacggcatcctgctggcc
gagatcagcagtgaccgctggctgtccaactacgacacgatcatcgtcgacgaggcacac
gaacgcagcctcaacatcgatttcctgctgggctatctgaagcagctgctgaagaagcgc
caggatctcaaactgatcgtcacctcggcgaccatcgatacctcgcgcttcgcccagcac
tttgatgatgcgccggtgatcagcgtggaaggccgcaccttcccggtggacgtgcgctac
cgcccgctggaaggcgagggcggcggagacgccgacggtggccgcgatggcgagcgcacc
gtgaatgatgcggtggtcgcggcggtggatgaaatcacccgcatcgacccgcgcggcgac
atcctgctgttcttcccgggcgagcgcgaaatccgcgatgcgcaccaggcactggagcgg
cgcaagtaccgcggcacggatgtgctgccgctgtatgcgcggctgtcggtcaaggaccag
gacctggtgttcaacccgggcagcaaccggcgcatcgtgctggccaccaacgtcgcggaa
acctcgctgacggtgccgcgcatccgctatgtaatcgaccccggcttcgcccgcatcaag
cgttacagcccgcgccagaagctggaccggctgcatatcgaagcggtctcgcaggccagc
gccaaccagcgcaagggccgctgtggccgcgtgtccgaaggcatctgctaccggctgtat
tccgaagcggatttccagtcgcgcccggagttcaccgatcctgaaatccgccgctccagc
ctgtccggggtgatcctgcggatgctgcagctgggcctgggcaggatcgaggatttcccg
ttcctggaagcaccggacgaacgcgccatcgccgatggctggcagcagctgggtgagctg
ggtgcggtcgatgccgagcgccgcctgaccccgatcgggcgccagatggcgcgcctgccg
gtggacgtgaaactggctcgcatgctggtcgccgcgcaggcacagggctgcctgcggccg
atgctggtgatcgcctcgttcctgggcatccaggacccgcgtgagcgcccaccggaagcg
cgcgccgccgcggacaacgcacatgcgctgttcgccgatgggcgctcggaattcgtcggc
gtgctgcgcctgtgggacggctaccgccaggcccacgaagacctcacccagtccaagctg
cgcgactggtgtgggcgacattttcttggtttcctgcgcatgcgcgaatggcgggaactg
catcgccaactgcgcgtgctgtgcgaagaactgggctggaatgaagagccggccgagacc
tcgttggcgccgctgctggccggttcctcggcaccggcaccggcgcgcgatgacgaggcc
aggatcaaggcgacgcgtggccagcagcaccgtgccgcgcggcttgcccgcgaagggaag
tccgaaccggcgcttgtcgagaccaaggcggcacccggcaacggtgccgatcccgaggca
cgcagcgcgttcagcgacaaggtgcgcgccgcggcgtaccagaccctgcaccgcgcgctg
atcgccggcctgcccacgcagatcggccatcgcagcgacaagggcgatttcctggcgcca
cgccagcgtcgcttcctgccgttcccgggctcggccctggccaagcggccgccgccgtgg
ctgctcactgcaacactgctggacacccagaagatctgggggttgaccaacgcggcgatc
gagccggactgggtcatcaacgaactgccgcacctgctgctgcgcaagcacttcgatccg
cactggtcgcgcgcgcagggccaggtgctggcctcggagcagatcagtctgttcgggctg
gtgctggccccgaaaaaaccggtgcattacggccgcatcgcgccaggcgaggcgcatgac
atcttcgtgcgccagggcctggtgaccggcgagatcaacacccgggccggcttcgtcgcc
gacaacctcaaggtgctggaacaggcgcgcgaggaagaagccaagctgcgccgcgccggt
atcgtcgccgatgaaggctggcaggcgcgctggtacctggaccggattccggccgagatc
cattcggcgatgggcctggatacctggtggaaagcactggcgccggagaagcgccgggcg
ctgtcgtggacgctggccgatctgctgccgggcgaaggcagcgatgccgagcgctatccc
aggtacctgccgctgggcgatgcgcggctggcgctgcattacaccttcgaacccggcgcc
gaggaagatggtgtgacgctggaggtgccgctgcacctgctcaacgcgctggatccggcg
cggctgtcatggctggcgccgggcttcgtcgctgacaaggccgccgcattgatccgcagc
ctgcccaaggcgatgcgccgcaactatgtgccggcaccggactttggccgcgcatttgcc
gaggccttcgccgaaccgaccgccgatgacatccggggcgaactggcgcggttcctctcg
cgcgcgacgggtgccaagctggccgcgaccgatttcgacgaagcctcgctggagccgcac
ctgcgcatgaacctgcgcctgcgcgatgcgggcggcaaggtgctggcgacctcgcgcgat
ctggaggcgctgcgcgcgcgcttcggcgacaaggccggtgaggccttcgccgcacgcgca
gggcgtgcgctggccgcggaagggctacgcgatttcccggccaccccgatcccgctgcag
gtgcccggcgaagccggcgtgccggcgtacccggcgctggtcgatcagggcgagaccgca
gcgctgaagatcttcgccgaccgcaacgaagcgctcgagcagcacccgctcggggttcgt
cgattgatggagatcgcgctggccgacaaggccaagcaggcgcgcaagcaattgccggtg
ccgcccaagaccgggctgctgtacgccgcgatcgaatcgcaggagcggctgcggggcgat
ctggtcgacgcggcgatgaatgccgtgctggccgatgggctgggtgatatccgcgaccct
gccgcgttcgccaaacgcagtgccgaggcgggcaaggcgttgttcggtgaggcgatggcg
cgcctgaagctggccgagaacatcctcgcccacgtggccgagctcaaaccacagctggaa
gcgccgctgatggggtgggcgcgtggcaacctcgatgacatggagcagcagcttgccgcg
ctggtccatcccgggttcctgcgtgacacgccggccgacgcgttggcgcagtacccgcgc
tatctgcgcgcgatgatcctgcgcaccgagcgtgccaagcgcgatccaccgcgtgatcag
gcccgcatgctcgagctgcgtccgttcgtggaggcgctggcgcaggccgacgcgcgcggc
ctgcgccagcggccgcagtggcaggacctgcgctgggacctggaggagctgagggtgtcg
ctgttcgcccaggagctcggggcgcgtaccggcatttcggccaagaaactggcccagcgc
gtggccgcgctgcagaaggcctga
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