Stenotrophomonas sp. LM091: BIZ42_05125
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Entry
BIZ42_05125 CDS
T04630
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BIZ42_05125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
slm03019
]
BIZ42_05125
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_05125
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIZ42_05125
Messenger RNA biogenesis [BR:
slm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BIZ42_05125
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BIZ42_05125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AOX61632
UniProt:
A0A1D8Y7V0
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All DBs
Position
1164636..1166441
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AA seq
601 aa
AA seq
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MSSRPAHDLLSRIFGYDEFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPSLLRDGT
GIVISPLIALMQDQVEALRQLGVRAEYLNSTLDGETSARVERELLAGELDMLYVAPERLL
TGRFLSLLSRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPDVPRIALTATADPP
TQREIAERLDLTNAQHFVSSFDRPNIRYTVVQKDNAKRQLLDFLKVHRGAAGIVYCMSRR
KVEETAEFLCKEGLNALPYHAGLPPEVRAANQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGDVVLLKQMIEQSEAGEERKALERS
KLDHLLGYCESMQCRRQVLLAGFGETYPQPCGNCDNCLLPPDAWDASVAAQKALSCVYRS
GQRFGVGHLIDILRGGENEKVRQFGHTELSTYGIGKDLDARTWRSVFRQLVASSLLEVDS
SAYGGLRLTDGSREVLKGQRKVMMRRETPKAARERDRSGQRTGLSVLPQDLALFNALRGL
RAELAREQNVPAFVIFHDSTLRNIAEQRPTSVDALGRVGGIGGTKLARYGDRLVEIVREE
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcccgccccgcgcacgacctgctcagccgcatttttggttacgacgaattccgc
ggtccgcagcaggcgatcgtcgagcatgtcgccgccggcaatgacgcgcttgtcctcatg
cccaccggcggcggcaagtcgctgtgctaccaggtcccctccctgctccgcgacggcacc
ggcatcgtcatttcgccgctgatcgcgctcatgcaggaccaggtcgaagccctgcgccag
ctcggcgtccgcgccgaatacctcaactccaccctcgatggcgaaaccagtgcgcgcgtc
gaacgcgaactgctcgccggcgaactggacatgctttacgtcgcgcctgagcgcctgctc
accggtcgcttcctgtcgctgctctcgcgcagccggatcgccctgttcgccatcgacgaa
gcccactgcgtctcccagtggggccacgacttccgccccgaataccgccagctcaccgtc
ctgcacgaacgctggcccgacgtgccgcgcatcgcgctgaccgccaccgccgatccgccc
acccagcgcgagatcgccgaacgcctggacctcaccaacgcccagcacttcgtcagctcc
ttcgaccggcccaacatccgctacacggtcgtccagaaggacaacgccaaaaggcagctg
ctggacttcctcaaggtccaccgcggggccgccggcatcgtctactgcatgtcgcggcgc
aaggtcgaggaaaccgccgagttcctctgcaaggagggcctgaacgccctgccctaccac
gccggcctgccgcccgaggtccgcgccgccaaccagcgtcgcttcctgcgcgaggatggc
atcgtcatgtgcgccaccatcgccttcggcatgggcatcgacaaaccggacgtgcgtttc
gtcgcgcataccgacctgcccaaatcgatggaaggctattaccaggaaaccggccgcgcc
ggtcgcgatggcgagcccgccgaggcctggctctgctacggcctgggcgacgtggtgctg
ctcaaacagatgatcgagcagtccgaggcgggcgaagaacgcaaagcgctggaacgctcc
aaactggaccacctgctcggctactgcgaatccatgcagtgccgccgccaggtcctgctg
gccgggttcggcgagacctacccccagccctgcggcaactgcgacaactgcctgctgccg
cccgatgcctgggatgccagcgtcgccgcccagaaggcattgagctgcgtctaccgcagt
ggccagcgcttcggcgtgggccatctgatcgacatcctgcgcgggggcgagaacgagaag
gtccgccagttcgggcataccgaactgagcacctatggcatcggcaaggatctggacgcg
cgtacctggcgcagcgtgttccgccagctggtcgcctccagcctgctcgaggtggacagc
agcgcctacggcgggctgcgcctgaccgatggcagccgcgaggtgctcaagggccagcgc
aaggtcatgatgcgccgcgagacgcccaaggcggcccgcgagcgcgatcgcagcggccag
cgcaccggcctgtcggtgctgccgcaggacctggcgctgttcaatgcgctgcggggcctg
cgcgccgaactcgcgcgcgagcagaacgtgccggccttcgtgatcttccacgacagcacc
ctgcgcaacattgccgaacagcgccccaccagcgtcgatgcgctggggcgggtcgggggc
atcggtggcaccaagctggcccgttacggcgaccgcctggtcgagatcgtgcgcgaggaa
ggctga
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