Stenotrophomonas sp. LM091: BIZ42_08970
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Entry
BIZ42_08970 CDS
T04630
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
slm
Stenotrophomonas sp. LM091
Pathway
slm03420
Nucleotide excision repair
slm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
slm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BIZ42_08970
03430 Mismatch repair
BIZ42_08970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slm03400
]
BIZ42_08970
Enzymes [BR:
slm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIZ42_08970
DNA repair and recombination proteins [BR:
slm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BIZ42_08970
MMR (mismatch excision repair)
Other MMR factors
BIZ42_08970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AOX62329
UniProt:
A0A1D8Y9Y5
LinkDB
All DBs
Position
complement(2049886..2052075)
Genome browser
AA seq
729 aa
AA seq
DB search
MDVSHLLDGLNPAQREAVSAPPGHHLVLAGAGSGKTRVLIHRIAWLNEVCGVPTHGIFAV
TFTNKAAGEMRHRIDLQLPQGSRGAWIGTFHGLAHRLLRLHYQDAKLPDSFQVMDSDDQL
RLVKRVVQQLEIDDGKFPPKQIAWWINEQKDEGRRPQHIQPEPHDAWLETMRQAYAAYQE
RCDRAGLVDFAELLLRAHELLRDNPALLAHYRSRFREILVDEFQDTNAIQYAFVRVLAGD
SGHVFVVGDDDQAIYGWRGAKVENVQRFLKDFPGAQTVRLEQNYRSTANILGAANAVIAH
NPDRIGKELWTDSGDGDPIDLYAAYNEMDEARYVVERARQWVRDGGSYGDVAVLYRSNAQ
SRAFEEALLSEQVPYRVYGGMRFFERAEIKDALAYLRLMTNRNDDAAFERAVNTPTRGIG
DRTLDEVRRLARAQAISLWEATMLTTQGNALAARARNALAGFLVLVNQLQAEADTMTLAE
RIDHVLMRSGLREHWSKESRNALDSESRADNLDELVSVASRFVRREDDVEETQDMSELVA
FLAYASLEAGEGQAQAGEEGVQLMTLHAAKGLEFPLVFLAGMEDGLFPSARSLEESGRLE
EERRLAYVGITRARQKLVLCYAESRRIHGQDNYNVPSRFLREIPRELVNEVRPKVQVSRG
TSLGANRVMGHAALEAPPLKLGAMVNHPKFGEGMVTDYEGSGQHARVQVEFIEAGSKWLV
MAYANLTVI
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttcccacttgctcgacgggttgaaccccgcccagcgcgaagctgtgtccgcc
ccgcccggccaccatctggtgcttgccggtgccggttccggcaagacccgcgtgcttatc
caccgcatcgcctggctcaatgaagtctgcggcgtgccgacccatggcatttttgcggtc
accttcaccaacaaggccgccggggagatgcgtcaccgcatcgacctgcagctgccgcag
ggcagccgcggcgcctggatcggcaccttccacggcctggcccaccgcctgctgcgcctg
cattaccaggacgccaagctgcccgacagcttccaggtgatggactcggacgaccagctg
cggctggtcaagcgcgtggtccagcagctggagatcgacgacggcaagttcccgccgaag
cagatcgcctggtggatcaacgagcagaaggacgagggccgccgcccacagcacatccag
cccgagccgcatgatgcgtggctggagaccatgcgccaggcctacgcggcctaccaggag
cgctgcgaccgtgccggcctggtcgatttcgccgagctgctgctgcgcgcgcatgaactg
ctgcgcgacaacccggccctgctggcccactaccgttcgcgcttccgcgaaatcctggtg
gacgagttccaggacaccaacgccatccagtacgccttcgtgcgcgtgctggccggcgac
agcggccacgtgttcgtggtcggcgacgacgaccaggccatctacggctggcgcggcgcc
aaggtcgagaacgtccagcgcttcctgaaggatttcccgggtgcgcagaccgtgcgcctg
gagcagaactaccgctccaccgccaacatcctcggcgcggccaatgcggtgatcgcgcac
aacccggaccgcatcggcaaggagttgtggaccgacagcggcgatggcgatccgatcgat
ctgtacgcggcctacaacgaaatggacgaggcgcgttacgtggtcgagcgggcgcgccag
tgggtgcgcgatggcggcagctacggcgacgtggccgtgctctaccgcagcaacgcacag
tcgcgcgcgttcgaagaagcactgctctccgagcaggtgccgtaccgtgtgtatggcggc
atgcgcttcttcgagcgcgccgaaatcaaggacgcgctggcatacctgcggttgatgacc
aaccgcaacgatgacgccgccttcgaacgcgcggtcaacacgccgacgcgcggcatcggc
gaccgcaccctggatgaagtgcgccggttggcgcgcgcccaggcgatctcgctgtgggaa
gcgaccatgctgaccacccaggggaatgcgctggccgcacgcgcacgcaacgcgctggcc
ggtttcctggtgctggtcaatcagctccaggccgaagcggacacgatgaccctggccgaa
cgcatcgaccacgtgctcatgcgctcgggcctgcgcgagcactggtccaaggaaagccgc
aacgcgctggactcggaatcgcgcgcggacaacctggacgaactggtctcggtggcctcg
cgcttcgtgcgtcgcgaggatgatgtcgaagaaacccaggacatgagcgagctggtcgcc
ttcctcgcctacgcctcgctggaggctggcgaaggccaggcccaggctggcgaagagggc
gtgcagttgatgacgctgcacgccgccaagggcctggaattcccgctggtgttcctggcc
ggcatggaagacggcctgttcccgagtgcacgttcgctggaagaaagcggccggctggaa
gaagagcgtcgtctggcctacgtgggcatcacgcgcgcgcgccagaagctggtgctctgc
tacgccgaatcgcgccgcatccatggccaggacaactacaacgtgccctcgcgtttcctg
cgcgagatcccgcgtgagctggtgaacgaagtgcgccccaaggtgcaggtctcgcgcggc
acctcgctgggcgccaaccgggtgatgggccatgcggcgctggaggcaccgccgctcaag
ctgggcgcgatggtcaaccatcccaagttcggcgaaggcatggtcaccgactatgaaggc
agcggccagcacgcccgcgtgcaggtggaattcatcgaagccggcagcaaatggctggtg
atggcgtatgccaacctgacggtgatctga
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