Salipaludibacillus sp. LMS25: MM221_07190
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Entry
MM221_07190 CDS
T08296
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
slms
Salipaludibacillus sp. LMS25
Pathway
slms03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
slms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MM221_07190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
slms03400
]
MM221_07190
Enzymes [BR:
slms01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MM221_07190
DNA repair and recombination proteins [BR:
slms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MM221_07190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UTR16324
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Position
1558284..1560110
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AA seq
608 aa
AA seq
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MVPMRLTPTTLLPDGDDWQYEVKYDGFRCMLLIEKGSVQVLSKTGKVLNTSFPEIEAFVQ
QRAVALQPYLPLQLDGELVHLVNRYKSHFSTVQKRSRMKKGTAIRDISAKLPCHLVVFDL
LKVNGTSLVTKSLQQRQEQLHLIFKELDFPLTVTPEDSRCLQYIAPSASLVHLWDKIVQF
NGEGLIAKKHTSAYKEGIRSKQWLKKKFWRTISVILLEYNEFNGYFQGAVYQDSALIPVV
DVIHGFSDTERNTLIAMFKQNGHQITSTIWQLSPSICVSVACIDFDGSHLREPRFTSFLL
HEQPDNCTWEQMNRQLYPLPSHVMITHHDKPVWPEQHVTKDDYLIFLQKVGPYMLPFLHN
RLLTVIRYPHGVDGDAFYQKNVPDYAPEFVKTTRADDIAYITCNSMDTLLWLGNQLALEF
HIPFQPYTERKPTEIVLDLDPPSVSHFSLAIEAAQHFKAIFDECSITSFVKTSGRKGLQL
YIPLPKDTFSYHDTRIITSFLCHFLCEQKPSLFTTERLKKKRGERLYLDYMQHDAGKTLI
APYSPRGEKDGTVAVPLYWEEVNDNLSPSHFTIKNVADRLLQKGDPFRFMYEATNKDALQ
ALLDRLKV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggtaccgatgcgtttaacgcctacaacgcttttgcctgacggtgatgattggcaatat
gaagtgaaatatgatggatttcgttgtatgcttcttatagaaaagggcagcgtgcaagtg
ttaagcaaaacggggaaggttttaaatacttccttccctgagattgaagccttcgtccag
cagcgtgcagttgctttacagccgtatctccccctccaattagatggtgaattagttcat
ttagtgaataggtataaaagtcatttttctacagtccagaagcggagcaggatgaaaaag
ggaacagcgattcgggacatatcagctaaacttccgtgtcacctcgttgtgtttgatttg
ctaaaggttaatggaacctctcttgtcacgaagtctttacaacaacgtcaggaacaatta
catctcatatttaaagagctggactttcccttaactgttacacctgaagacagccggtgc
cttcaatacatcgccccttctgcatctttagtgcatctatgggacaaaatcgttcaattt
aatggtgaaggcctcatcgccaaaaagcacacttcggcatacaaagaaggcatcagaagt
aagcaatggttgaaaaagaaattttggcgcacgattagtgtaattttattagagtataac
gaatttaatggttattttcagggggccgtttaccaagatagtgcgttaataccagttgtg
gatgtgatacacggctttagtgatacagagcggaacactctcattgccatgtttaaacaa
aatgggcatcagatcacttctactatatggcaattatcaccctcaatttgtgttagtgtg
gcatgtattgattttgacggttcccacttgcgtgagccgcgctttacatcgtttttatta
catgaacaacctgataactgcacgtgggaacaaatgaatcgacagctttaccccctgccc
tctcatgtgatgatcacccatcacgacaaaccggtttggccggaacagcacgtaacaaaa
gatgattacctgatctttttacaaaaagtcggcccctatatgctaccttttttgcacaat
cgcttgctgaccgtcattcgttatccacacggtgtggacggtgacgctttttaccaaaaa
aacgtgcctgattatgccccagagttcgttaagacaactcgagcagacgatatagcttac
atcacgtgtaatagcatggacacccttctttggttaggaaaccagcttgctttagaattt
cacatcccttttcagccttatacagaacgtaaaccaactgaaattgtcttggacttagat
ccgccttcggttagccatttttcattagccattgaagccgcgcaacattttaaagccata
ttcgatgagtgtagcattacttccttcgttaaaacatctggccgaaaagggttacaattg
tatattcctttgccaaaggacacattttcttatcatgacactcgcatcataacatctttt
ctctgtcactttttatgtgaacaaaagccctcactgtttacaactgaacgtttaaaaaag
aaacgaggtgagcgcttgtatcttgattatatgcagcatgatgctggaaaaacgctcatt
gccccttattcaccaagaggggagaaagacggaacagtggcagtccctttatattgggaa
gaagttaatgacaacctttcaccttctcactttactattaaaaacgtcgctgaccgcctt
ttacaaaaaggagacccttttagatttatgtacgaggcaactaataaagacgcattacag
gcgcttttagaccgactaaaagtgtag
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