Sideroxydans lithotrophicus: Slit_0761
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Entry
Slit_0761 CDS
T01196
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
slt
Sideroxydans lithotrophicus
Pathway
slt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
slt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Slit_0761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
slt03021
]
Slit_0761
03400 DNA repair and recombination proteins [BR:
slt03400
]
Slit_0761
Enzymes [BR:
slt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Slit_0761
Transcription machinery [BR:
slt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Slit_0761
DNA repair and recombination proteins [BR:
slt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Slit_0761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADE11000
UniProt:
D5CP59
LinkDB
All DBs
Position
762017..766234
Genome browser
AA seq
1405 aa
AA seq
DB search
MKALLDLFKQVTQKEEFDTIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTEPGMTPLNRGQLLSEDDYLAKLEEYGDEFSAVM
GAEGVRALLRALDVPAEIEKLRAELEATSSETKIKKFAKRLKVLEAFMQSGIKPEWMVME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFERLEKMGLATTIKAGKRMVEAEEPIVWDILEEVIHEHP
VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREKVGALGEGSIFADVSEVLRAYRSN
QVDLQAKVVVRIKEVVTNEAGEKQDKLTRYETTVGRSILSEILPANLPFSAVNKTLKKKE
ISRLINTSFRRCGLRDTVIMADQLMYTGFAYATRAGISICVDDMLVPQQKNDLIAAAEKE
VHEIQTQYTSGLVTQGERYNKVVDIWGRTGDQVAKAMMDQLGVEPVRDLTTGEALFDKKG
KAVTQESFNSIYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPITANFREGLNMLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVITENDCGTTNGRSMKALVEGGEV
IEALRERILGRVVAADVVNPETSETLYEAGTLLDEDKVEHIESLGVDEVRVRTPLTCDTR
YGLCAKCYGRDLGRGGLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTVVASQVE
SKSNGVIKYSPNMRTVTTARGELVVVARSGEVMVTDDHGRERERHKVPYGANLTEREGKT
VRAGEILATWDPHTRPIITEYAGRVRFENVEEGATVAKQIDEVTGLSTLVVIDPKRSTTG
KGVRPLVRLLDDAGHEIKIAGTETPISVTFQVGSIITVEDGQHVGVGDVLARIPQESSKT
RDITGGLPRVAELFEARSPKDAGMLAEVTGTASFGKETKGKQRLVITDTEGQAHEFLITK
DKHVLVHDGQVVNQGEMIVDGPADPHDILRLLGIEALAQYITDEVQDVYRLQGVKINDKH
IEVIVRQMLRRIAIIDEGDTTFIPKEQVERAELLQENERVVAAGKQPATFQHMLLGITKA
SLSTDSFISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHVLRRKQ
RLGLDMAEGAGLTELADAAEAQEGV
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctggatttattcaagcaggtcacacagaaggaagagttcgatacgatc
aagatcgggctggcctctcccgagaagatccgttcgtggtcttatggcgaagtgaagaaa
ccggagaccatcaactaccgcaccttcaagcccgagcgcgacggtcttttctgcgccaag
atattcgggccagtcaaggattacgaatgtctttgcggcaagtacaagcgcctcaagcat
cgcggtgtgatctgcgaaaagtgcggcgtggaagtcaccttgtccaaggtacgccgcgag
cgcatgggccacatcgagctggcctccccagttgcgcatatctggttcctgaagtcgctg
ccatcccgtctgggcatggtgctggacatgaccctgcgcgacatcgaacgcgtgctgtac
tttgaagcctatgtggtgaccgagcccggcatgaccccgctgaaccgcggtcagctgttg
tccgaggacgattaccttgccaagctggaagagtacggcgacgagttctccgccgtgatg
ggtgccgagggcgtgcgcgcattgttgcgtgcactggatgtgccggccgagatcgaaaag
ctgcgcgccgaactggaagcgaccagttccgagaccaagatcaagaaattcgccaagcgc
ctgaaggtgctggaagcgttcatgcagtccggcatcaaaccggaatggatggtgatggaa
gtgctgccggtgctgccaccggaattgcgtccgctggtgccgctggatggtggccgtttc
gcgacttccgacctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgcctgaag
cgtctgctggaactgaaggcaccagagatcatcgtgcgcaacgagaagcgcatgctgcag
gagtccgtggactcgctgctggacaacggtcgtcgcggcaaggccatgaccggtgccaac
aagcgcccgctgaaatcgctggccgacatgatcaagggcaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactccggccgttcagtgatcgtggtgggcccgcag
ctgaaactgcaccagtgcggtctgccgaaaaagatggcgctggaactgttcaagccgttc
atcttcgagcgtctggaaaagatggggctagccaccacgatcaaggccggcaaacgcatg
gtcgaggcggaagagcctatcgtgtgggatatcctggaggaagtcatccacgagcatccg
gtgatgctgaaccgcgcacctacgctgcaccgtctgggtatccaggcattcgagcctatc
ctgatcgaaggcaaggccatccagttgcatccgctggtctgctcggcattcaacgccgac
ttcgacggtgaccagatggctgtgcacgtgccgctgtcgctggaagcgcagatggaagcg
cgcaccctgatgctggcctccaacaacgtgctgtctccagccaacggtgagccgatcatc
gtgccgtcgcaggacatcgtgctggggctgtactacatgacgcgcgagaaagtcggtgca
ctcggtgaaggttccatcttcgcggacgtgtccgaagtattgcgtgcctaccgttccaat
caggtggacctgcaagccaaggtggtggtgcgtatcaaggaagtggtcaccaacgaagca
ggcgagaagcaggacaagctgacacgctacgagaccacggtgggccgttccatcctgtcc
gagattctgccggcgaacctgccgttcagcgcagtgaacaagacactgaagaaaaaagag
atctcgcgcctgatcaacaccagtttccgtcgttgcggtctgcgcgacacggtgatcatg
gccgaccagttgatgtataccggtttcgcctacgcgacccgcgccggcatctcgatctgt
gtggacgacatgctggtgccgcaacagaagaacgatctgatcgccgctgccgaaaaagaa
gtgcacgagatccagactcagtacacctccggtctggtgacccagggcgagcgctacaac
aaggtggtggacatctggggccgtaccggcgatcaggtcgccaaggccatgatggatcaa
ctcggcgttgagcctgtgcgcgacctgacaacgggtgaagcactgttcgacaagaagggc
aaggcagtcacgcaggagtcgttcaactccatctacatgatggccgactccggcgcgcgc
ggttctgcggcgcagattcgtcagttgtccggcatgcgcggtctgatggcgaagccggac
ggctccatcatcgagacgccgatcaccgcgaacttccgcgaaggcctgaacatgctgcag
tacttcatttccacccacggtgcacgtaagggtctggcggatactgcgttgaagacggcg
aactccggctacctgacgcgtcgtctggtggacgtgacgcaggatctggtcattaccgaa
aacgattgcggcacgaccaacggtcgttcgatgaaggcgctggtcgaaggcggcgaagtg
atcgaagccttgcgcgagcgtatccttggccgcgtggtggcagcggatgtggttaatccg
gaaaccagcgagactttgtacgaagccggtactctgcttgacgaagacaaggtcgagcat
atcgaatcactgggtgtcgatgaggtgcgcgtgcgcactccgctgacctgcgatacgcgc
tatggcctgtgcgccaagtgctatggtcgcgatctggggcgcggcggtctggtgaacgtg
ggcgaagcagtcggtgtgatcgctgcgcagtccatcggcgagccgggcacacagctgacc
atgcgtaccttccacatcggtggtgcggcatcgcgtaccgtggtggcaagccaggttgaa
agcaagtccaatggcgtcatcaagtacagcccgaacatgcgcaccgtaaccacggcacgc
ggcgaactggtggtggtggctcgttccggcgaagtgatggtgaccgacgaccatggccgt
gagcgcgagcgtcacaaggtgccgtacggtgccaacctgaccgaacgcgaaggcaagact
gtgcgtgcaggcgagatcctggcgacctgggatccgcatacccgtccgatcattaccgaa
tatgcaggccgtgtgcgcttcgagaacgtggaagaaggcgcgaccgtcgccaagcagatt
gatgaagtgaccggtttgtctacgttggtggtcatcgatccgaaacgttccactaccggc
aagggtgtgcgtccgctggtgcgtctgctggatgacgccgggcacgagatcaagatcgcc
ggaacggaaacgccgatctcggtgaccttccaggtgggctccatcattaccgtggaagac
ggccagcatgtgggcgtcggcgatgtgctggcacgcatcccgcaggaaagctcgaagacg
cgcgacatcaccggcggtctgccgcgcgtggccgagctgttcgaggcgcgttcgcccaaa
gacgcaggcatgttggcggaagtcactggtacggcctcgttcggtaaggagaccaaaggc
aagcagcgtctggtcatcaccgataccgaaggtcaggcgcatgaattcctgatcaccaag
gacaagcatgtgctggtgcacgacggtcaagtggtgaaccagggagagatgatcgtggat
ggtccggccgatccgcacgatatcctgcgtttgctgggtatcgaagcgctagcgcagtac
atcaccgacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcac
attgaggtgatcgtgcgccagatgctgcgccgtatcgccatcatcgacgagggcgatacc
accttcattccgaaggagcaggtggagcgtgctgagttgctgcaggaaaacgaacgcgtg
gtggcagcaggcaagcaaccggcgactttccagcacatgctgctgggtatcaccaaggca
tctttatccaccgattcgttcatctccgcagcttccttccaggaaacgacgcgcgtgctg
accgaggcggcgatcatgggcaagaaagacgatctgcgaggtctcaaggaaaacgtcatc
gtcggtcgcctcattccggccggtacgggcttggcctatcacgtattgcgtcgcaagcag
cgtttgggtctggacatggcggaaggagccggattgaccgagttggcggacgccgcagag
gcacaggaaggcgtctag
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integrated database retrieval system
