Sander lucioperca (pikeperch): 116051184
Help
Entry
116051184 CDS
T07345
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
sluc
Sander lucioperca (pikeperch)
Pathway
sluc04510
Focal adhesion
sluc04512
ECM-receptor interaction
sluc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sluc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116051184 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116051184 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116051184 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sluc04147
]
116051184 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
sluc00536
]
116051184 (col6a4a)
Exosome [BR:
sluc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116051184 (col6a4a)
Glycosaminoglycan binding proteins [BR:
sluc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116051184 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
116051184 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
GGDEF_2
Motif
Other DBs
NCBI-GeneID:
116051184
NCBI-ProteinID:
XP_031157288
LinkDB
All DBs
Position
10:18685376..18784922
Genome browser
AA seq
2770 aa
AA seq
DB search
MEGRRGLLLSLIMAACFHGNAAQKTVCTQEAVADIVFMVDGSWSIGTENFKQIRQFLYTL
VNSFDVSPEHVRIGLVQYSTTPRTEFLLNTFQNKDDILQHIDTLPYMGGGTQTGLGLDFM
LNNHFVEEAGSRRGQKVPQIAVVITDGKSQDNVESHAQDLRRRGIILYAIGIKDADEEQL
KDIANEPHSQHVYSVSDFAALQGISQSIVHTLCTTVEEAKRQLLQVSQECAEATVADIVF
LVDGSSSIGASNFQEIKVFLRSVIAGLDIGPDKVRIGVAQYSDDTYKEFLLKDYMDKNSL
LAAVDAFPYRQGGTETGKAIDFLLQEYFKEDAGSRAKQRVPQIAVVITDGDSTDDVIQPA
QRLRQHGVIVFGIGVGQANLQQLESIANRPRKRFLHSIDSYQALQRLTEGLLRTVCVSVV
AQGEALAETFADIFFLVDSGLTTQEFQQIRNILIRLSNQMNIGASAYRLGLAQYGEDVKV
EFLLNAHQTKEETQKAVKNFRPRKLKPNELRRLGRALHNASTHFFTKEAGSRAHEGYREF
LVVISGKDSDDSVYKESRVIKTSGVTVVGLSFGASEQEMRVIATDPYIYLRQSITNIVPT
LKANFENEEQQLTQTLDCKAAKLADVVFIVDESGSIGKTRFQLVRSFLHSMVNVLEVSQS
KVRVGIVTYNTKATAQVYLDSFDNKDDLLNFIKILPYHEGGTHTGEALKFTQDKVFIENR
GSRKDKGVQQVAVVITDGESQDNVSTAAYNLRRDGVTIYAVGVENANEAQLVEMASYPPN
KHKFIVDSFAKLKSLEQSLQKSMCQNILQQAFSVSTRTTAIKEGCVQTDEADIFFLIDHS
GSIHPNDFKDMKKFIIEFLNTFRIGPQHVRIGIAKFASSPVLEFDLKAYSDTKTLEKAVE
DIQQLGGGTETGKALEFMGPIFKQAVVSRGHKVPEYLVVITDGQSTDEVKGPAEKLRAHG
VTVYAIGVKAADEKQLQEISGDDKRTFFVNNFDALIPIKNEIITDICSEDACKDVPSDLL
FLIDSSGSIYPEDYEKMKEFMKAVISKSFIGKNEVHVGVMQFSDERQLAFPLTRYFSKEE
MSAAINEMQQIGGGTLTGEAITDVSQYFTEGRGGRPSMRQRLVVITDGEAQDEVKGPAEA
LREKGVVVYAIGVVDANTTQLGEIAGSPDRVYAERDFDALKDLESQLALELCDPERDCKK
TEQADIIFLVDGSTSITLPKFKSMQMFMASMVNQTTVGKDLTRFGVILYSTDARSVFTLK
EYSSKREVLNAILALKSPYGDTYTGKALKYSLEFFNKEHGGRADLQVPQILMVITDGDAT
DRNSLVAPSVALRDKGVSVFSIGVEGANKTQLEIMAGHETSRVFYVDNFKALETLYKNIS
HVLCNSTKPVCEKQQADLVFLLDQSGSINTQDYDIMKKFTTDLVNSFKVSKDLVRVGLAQ
FSSEFQDEFYLNKFDSEEAVTKHILDMVQLGGGTLIGKALDHIRDYFEASKGGRRSAGIS
QNLVLITDGESQDDVEDAADRLRAMGVEVFVIGIGDVHDLQLLQITGTPERLFTVRNFGS
LENIKQKVVDTICKSKPPEDPSDCTIDIAMGFDITRRTGAPDGTLISGHTKLQTFLPEIV
HYVSSVEGLCCVGPAPVKTNIAFRVVTRDGRTLNDFNFEGYSADVLKKVMSLQLAQPTYF
NTAMLQSFAQKFSAESRAGVKVLVIFSDGLDEDVMKLEHDSELLRKSGVSALLTVALEGV
RDPAQLQMVEFGRGFGYKLPLSIGMQSVGSAILKQIDTVSDRECCGVMCKCSGHEGSRGP
RGPPGTKGVSGQKGFPGFPGDEGTAGERGGPGPSGPQGVQGCSGLRGSKGNRGLRGDRGE
EGEEGLDGVNGEQGVTGKAGDRGVRGDPGNPGIPGIRGEPGPKGERGLRGDPGEPGASNT
VPGAKGEPGNPGLPGTPGQDGRPGESGIVGNPGPDGRRGTPGEKGPPGAPGDLGLQGIPG
ASGPQGTRGVRGQPGPRGIIGLPGPQGGPGPAGNPGSAGRRGPNGEKGQPGDPGDAGAPG
SLGPRGMPGQDGRDGYGPAGPKGIKGDPGFPGFPGLRGEDGFQGPKGYPGRKGNRGRGGI
SGRPGESGVPGDPGYAGHRGSRGSPGSKSMTECQLITYIRDNCACSQGGSACPAFPTELV
FGLDMSEDVTPAAFERQRSALIHLLDGITISEGNCPSGARVAVVAYSAYTKYVIRFQDYQ
RKSRLIDAVKNIALERTSNRRNLGAAMRFVGQNIFKRVRAGLLTRKVAVFLSNGPTQDVN
DIVTAMMEYRGLNIVPVVISLKNAPAISRAMEADDSGNSIFTVLGRDMAADLRKVQNCAI
CYDPCKRLEQCAFIQEPVQPQQVDVDLALVLDGSREMQADQYAGGQQLLGSVVEHLAVSQ
QPRRAGSQARVAVVQSGTQATKLEFGLGTYQSSTLMRRHLMGNMTQQGGSSALGKTLDFT
LKEVLMKAGQPRRRRALLAVVGTKTASEDQHMLRYISQKAKCDGVALFVVTVGEHYDRAQ
VEDLAGWPVAQHLIHLERLKADEQSYAQRFFRVFLSTLSKEMNTYPHPSFKRTCDQLRGQ
DGGQIFISGQGTAVVDEEEFGEEEEETFQEHTRGQTQTGQLDILDTLTRDGQTFVGQSHA
QCLLHADTGIQCEDYVQLWFFDKVIGACSPFWYGGCGGNANRFNTENECVRTCGAHNPNI
LPIPELAGFASKDSCFLSQDQGGCQNYTMMWFFDTEQRECSRFWYGGCGGNGNRFKTQDE
CENLCLTKSR
NT seq
8313 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggcgaggtctcctcctcagcctcatcatggcagcgtgtttccacggcaac
gccgctcaaaagacagtctgcactcaagaggctgtagccgacatcgtcttcatggtcgac
ggctcgtggagcatcggcaccgagaacttcaaacagatccgccagtttctgtacacgctg
gtcaacagcttcgacgtcagccccgagcacgtccgcatcgggctggtgcagtacagcacg
actcctcgcaccgagttcctgctcaatacctttcagaacaaggacgacatcctgcagcac
atcgacaccttgccttacatggggggcggcacccagacgggcctaggcttggacttcatg
ctgaataatcactttgtggaggaagctggaagccgcaggggccagaaggtgccgcagatc
gctgtggtgatcactgatggcaaatcgcaggacaacgtggagtcccacgcccaggatctg
aggagaaggggaatcattttgtacgcaattggtatcaaagatgcagacgaagagcagctg
aaagacatagccaacgagccgcacagtcagcacgtctacagcgtttcggactttgcagcg
ctgcagggaatttctcagagcatcgtccataccctttgcacgacggtagaggaagccaaa
cgacaactcctgcaagtgtctcaagaatgtgccgaagccactgtggccgacatcgtcttc
ctggtcgacggctcctccagcatcggcgccagcaactttcaggagatcaaggtgtttctc
cgaagtgtcatcgcaggcctcgacatcggccccgacaaagttcggatcggcgtggctcag
tacagcgatgacacttacaaggagtttctgctgaaagattacatggacaagaactcgctg
ctggccgccgtggacgcatttccctaccgacaaggaggcacggaaacaggcaaggccatc
gacttcctcctgcaggagtacttcaaggaggacgcggggagccgagccaagcaacgggtg
cctcagatcgctgtcgtcatcaccgatggagactccacagacgatgttatacaacccgcc
cagcgcctgaggcagcacggagtcatcgtgtttggtatcggggtaggacaagctaacctg
cagcagctcgagtccatcgctaaccggccacgaaaacgcttcctccactccatcgacagc
taccaggctctgcagaggctgacggagggtctgctgaggactgtttgtgtctctgtggta
gctcagggggaagccttggcagaaactttcgcagacatcttcttcctggtggacagcggc
ctgactacacaagagttccagcaaatcagaaacatcctcatacgactgtccaatcaaatg
aacatcggcgcgtccgcctaccgtctgggcttggcccagtacggtgaagacgtcaaggtg
gagtttcttcttaatgctcaccaaaccaaagaggagacgcagaaggctgtgaagaatttc
cgcccgcgcaaactaaaacccaacgagcttcgcagactgggcagagcattgcacaacgcc
agcactcactttttcaccaaggaagcaggaagccgggcgcacgaaggctaccgggagttc
ctggttgtcataagtggaaaagactcagacgattcggtgtataaggagtcacgtgtgatc
aaaacatccggagtaactgtggtggggttgagcttcggtgcatcggagcaggaaatgcgt
gtcatagccactgatccgtacatttacttaagacagtctatcaccaacattgttcccaca
ctgaaggctaactttgaaaacgaggaacagcagttaactcaaactctagattgcaaagca
gccaaactggcagacgtcgtgttcatcgtcgacgagtctggaagcatcggaaagaccaga
ttccagctggtacgctctttcctgcactcgatggtgaacgttctggaagtcagtcagtcc
aaagtgcgagtgggcatcgtgacgtacaacaccaaggccacggcgcaggtctacctcgac
agcttcgataacaaggatgatttgctgaacttcatcaaaatcctgccttatcacgaaggt
ggaacgcacaccggagaggccctaaagttcacccaggacaaggttttcatcgagaaccga
ggaagcagaaaggacaagggcgtccagcaggtggcggtggtgatcacagacggggaatcc
caggacaacgtgagcaccgcggcgtataatcttcggcgggatggtgtcacgatttacgca
gttggagtcgaaaatgccaacgaggcccagttggtagaaatggcatcgtatccccccaat
aagcacaagtttatcgtggacagttttgccaagctgaagtcgctggagcagagcctgcag
aaaagcatgtgccaaaacatccttcagcaagcgttctccgtcagtacgagaacaactgcc
atcaaagaaggctgcgtacaaacggatgaggcagacatcttctttctgattgatcattca
ggaagcattcatcccaacgacttcaaagacatgaagaagttcatcatcgagtttctaaac
accttccgtatcgggccccaacatgtccgcattgggattgcaaaattcgcgagttcacca
gtcttagagtttgatctgaaagcctactcagataccaagacgttggagaaagccgttgag
gatattcagcaattaggaggagggacggaaacaggaaaggcgctggaattcatgggccca
atctttaagcaagcagtggtgtctcgcggtcacaaagtcccagagtacctggtggtcatc
acggatggacaatccactgacgaggtcaaaggtcccgcagagaaactgagggcgcacggc
gtcaccgtgtacgccatcggcgtgaaggctgcagatgaaaagcagctgcaagagatttcc
ggcgacgacaaaaggactttctttgtcaataatttcgatgctttgattcccatcaagaac
gaaatcatcacagacatctgttctgaagacgcttgcaaagatgtaccgagcgacctcctt
ttcttgatcgacagctctgggagcatctatccagaagactacgagaaaatgaaagagttc
atgaaagccgtcatcagcaagtccttcatcgggaagaatgaggtgcacgtcggcgtcatg
cagttcagcgacgagcgacagctagcgttccccctcacccgctactttagcaaggaagaa
atgtcggcagccatcaacgagatgcagcagatcggcggaggcacgctcacaggcgaagcc
atcacggatgtgtcgcagtacttcactgaaggcagaggagggcgtcctagcatgaggcag
aggctggtggtgataacagacggcgaggcccaagacgaggtcaaaggccccgctgaggct
ctgagggaaaagggagtggtggtgtatgccatcggagttgtggacgccaacaccacccag
ctgggtgagatcgccggctccccagacagggtgtatgcagagagggactttgacgctctg
aaggatttggagagccagctggctttggagctctgcgatccagagagagattgtaagaag
acagaacaagctgacattattttccttgtggacggctccacaagcataaccctccccaag
ttcaaaagcatgcagatgttcatggcgtcaatggtgaaccaaaccacagttggcaaggac
ctgactcgcttcggggtcattctctactctaccgacgccagatctgttttcactctgaaa
gagtatagctccaaacgtgaagttcttaatgcaatattggcactgaagtcgccatacgga
gacacctacactggcaaagctttgaaatactcgttagagttctttaacaaagaacatggc
ggtcgagcagatctccaggtgccgcagattctcatggtgatcacagatggggatgctacc
gaccgtaacagtctggttgcgccatccgtggcactgcgagacaaaggggtcagtgtcttt
agtatcggagtcgaaggagccaacaagacacagctggagatcatggctggtcacgaaact
tccagagttttctacgtagataactttaaagccctggaaactctctacaagaatatttct
catgtcctctgcaattccaccaagccagtttgtgagaaacagcaggctgacctggtcttc
ctattggatcagtctggcagcattaacacacaggactacgacatcatgaagaagttcacc
acagacctggtgaacagcttcaaagtcagtaaagatttagtgcgggtaggacttgcccag
ttcagcagcgaattccaagatgagttttacctcaacaagttcgacagcgaggaagccgta
accaagcacattttggacatggtgcagctgggcggaggcaccctcatcggaaaggccctg
gatcacatcagggattattttgaggcgtcaaagggcggccgacgatctgccggaatctcc
cagaatctggtgctgatcacagacggcgagtcgcaggatgacgtggaggacgcagccgac
cgtctccgggctatgggggtcgaggtgtttgtcatcggcattggagacgtccacgacctg
cagctcctgcagattactggaacccctgagaggttgtttaccgtgcggaacttcggcagc
ttggaaaacatcaagcaaaaggtggtcgacaccatctgcaaatctaaaccccccgaagat
ccttctgactgcaccattgatatcgccatgggattcgatataactcgaagaaccggagct
cctgatgggacgctgatcagcggccacaccaagctccagaccttcctgccagagatcgtc
cattacgtttcctccgtagaaggcctgtgctgcgtcggccccgcacccgtcaagaccaac
atcgccttccgagtggtgactcgggatggacgcaccctgaacgacttcaactttgagggc
tacagcgccgacgtgttgaagaaagtaatgagcttacagttggcacagcctacttatttc
aacaccgccatgctgcaatccttcgcgcagaagttcagcgccgagtccagagctggtgtt
aaggtgctggtgatcttctccgacggactcgatgaagacgtgatgaaactggagcatgac
tcagagctgctgcgaaagtctggggtgagcgctctgctgacggtggctctggagggggtg
cgtgaccccgcccagctgcagatggtggagtttggccgaggattcggctacaagcttcct
ctcagcatcggcatgcagagcgtcggcagcgccatcctcaaacagatcgacacggtgtca
gacagggagtgctgcggcgtcatgtgcaaatgttcgggacatgaaggcagccggggccct
cggggcccaccagggacaaagggtgtgtcgggacagaagggattccccggcttcccagga
gatgagggcacggctggggagcgagggggtcccgggccaagcggacctcagggggtgcag
ggttgttctgggctcagaggatcgaagggcaaccgaggtctccgtggagaccggggcgaa
gaaggagaagagggactggacggagttaacggagaacagggagtgacggggaaagctgga
gaccgaggagtgagaggagacccaggaaacccaggtatcccaggtatcagaggggagccg
gggccaaaaggagagcgaggactcagaggagatccgggggaaccgggggcttctaacacc
gtcccaggagccaaaggagagcccgggaacccaggtttaccgggaacacctggacaggac
gggcggcccggggagagtggaatcgtcggaaacccgggtccagatggaagaagagggacg
cccggcgagaagggtccacctggagcgccaggagatctaggactccaaggcatccccgga
gcttcaggtccacagggcaccagaggggtcagaggtcagcctggacccagaggaatcatc
ggcctacctggacctcagggaggaccgggaccagctgggaacccggggtcagccgggcgc
cgtggacctaacggagaaaagggccaaccaggagacccaggtgatgcaggagctccagga
tcactgggaccccgaggaatgccgggtcaggacggcagagacggttacggacctgcagga
cctaaaggcatcaagggagatcctggtttccctggtttccctggtctgaggggtgaggat
ggctttcagggacctaaaggatacccgggacgtaaagggaaccgaggtcgaggcgggatc
tcaggcaggccgggagagtcaggcgtgcctggagatccaggatatgcaggacacaggggt
tccagaggatctcctggaagcaaaagcatgactgagtgccagctgatcacctacatcaga
gacaactgtgcatgttcccaaggtggatcagcgtgcccggccttccccaccgagctggtg
ttcggtctggacatgtcggaagacgtgaccccggcagccttcgagaggcagcgttccgcc
ctcatccacctgctggacggcatcaccatctctgagggcaactgtccatcgggcgctcgt
gtcgctgtggtggcttacagcgcctacacaaagtacgttatccgcttccaggactaccag
cgcaagagccggctgatcgacgctgtgaagaacatcgccctggagaggacgtccaaccgg
cgcaatctgggggccgccatgcgctttgtgggtcagaacatcttcaagcgcgtccgagcg
ggactgttgacgaggaaggtggcagtcttcctctctaacgggcctacgcaggatgttaac
gacattgtcaccgccatgatggagtaccgcggcctcaacatcgtcccagtggtcatctcg
ctgaagaacgctcccgctattagtcgagcgatggaggccgacgactcggggaactccatc
ttcacggtgctggggagggacatggctgccgacctgaggaaggtccagaactgtgcaatc
tgttacgacccgtgcaaacgtttggagcagtgcgccttcatccaggagccggtgcagcct
cagcaggtggacgtggacctggccctggtgctggacggctccagggagatgcaggccgat
cagtacgccggcggccagcagctgctgggctctgtggtggaacatctggccgtgagccaa
cagccccgcagggccggcagccaggcccgggtggctgtggtccagagcggtacccaggct
accaagctggagtttggcctggggacgtaccagagcagcacgctgatgcggaggcacctg
atggggaacatgacgcagcagggcggctcctcggcgctgggaaagacgctggacttcacc
ctgaaggaggtgctgatgaaggccggccagccccggaggaggagggcgctgctggccgtg
gtgggcaccaagacggcctccgaggaccaacatatgctgcgctacatctcccagaaagcc
aaatgtgacggcgtggcgctgtttgtggtgacggtgggcgagcactacgaccgggcgcag
gtggaggatctggccggttggcccgtagcgcagcacctgatccacctggaaagactgaag
gccgacgagcagagctacgcccagcgcttcttcagagtcttcctctccaccctcagcaag
gagatgaacacgtatcctcatccttctttcaaacggacctgtgaccagctgagaggccaa
gacggaggacaaatattcatatctggtcaggggacggcagtggtggacgaggaggagttt
ggggaggaagaggaggagacgtttcaggagcacacgaggggacagactcagaccggccag
ctggacatcctcgacaccctgaccagagacggacagacatttgttggacagtctcacgcc
cagtgtctgctgcatgctgatactggtatccagtgtgaggactatgtccaactgtggttc
tttgacaaagtcatcggtgcatgctctcccttctggtatggcggttgcggcggtaacgcc
aaccgctttaacacagaaaatgaatgtgtccggacatgtggcgcccataatccgaacatc
ctgccaattccagagctggccggcttcgcctctaaagacagctgtttcctcagccaggac
cagggcggctgccagaactacaccatgatgtggttctttgacaccgagcagagggaatgc
tctcgcttctggtacggcggctgcggcggcaacggaaaccgcttcaagacgcaagacgag
tgcgagaacctctgtctgaccaagagtcgatga
DBGET
integrated database retrieval system
