Streptomyces lividans: SLIV_06120
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Entry
SLIV_06120 CDS
T03222
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
slv
Streptomyces lividans
Pathway
slv03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
slv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SLIV_06120 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
slv03000
]
SLIV_06120 (alkA)
03400 DNA repair and recombination proteins [BR:
slv03400
]
SLIV_06120 (alkA)
Enzymes [BR:
slv01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
SLIV_06120 (alkA)
Transcription factors [BR:
slv03000
]
Prokaryotic type
Helix-turn-helix
AraC family
SLIV_06120 (alkA)
DNA repair and recombination proteins [BR:
slv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SLIV_06120 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
DUF6233
Motif
Other DBs
NCBI-ProteinID:
AIJ12239
LinkDB
All DBs
Position
complement(1364921..1366393)
Genome browser
AA seq
490 aa
AA seq
DB search
MHTDTERCVRAVQSKDARFDGWFFTAVLTTGIYCRPSCPVVPPKPGNMTFYPSAAACQQA
GFRACKRCRPDTSPGSPEWNRRADLTARAMRLIADGVVDREGVPGLASRLGYSTRQVERQ
LLAELGAGPLALARAQRAQTARLLIETTPLPMADIAFAAGFSSIRTFNDTVREVYALSPS
ELRTRAPRNRRAATAPGALSLRLPFRAPLNPDNLFGHLAATAVPGVEEWRDGAYRRTLRL
PYGHGIVALTPNPDHIACRLTLSDLRDLTVAISRCRRLLDLDADPTAIDDQLRADPLLAP
LVDKAPGRRVPRTVDEAEFAVRAVLGQQVSTAAARTHAARLVTAHGDPVDDPEGGLTHLF
PSTEALAAVDPETLAMPRTRRTTFTTLVAHLADGSVNPGVESDWAETRARLLALPGFGPW
TADVIAMRALGDPDAFLPTDLGIRRAAAELGLPSTPAALTARAAAWRPWRAYAVQYLWAT
DDHPINFLPV
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcacaccgacaccgagcgctgcgtgcgcgccgtgcagtcgaaggacgcgcggttcgac
ggctggttcttcacggccgtcctgaccaccggcatctactgccggccgagctgtccggtg
gtgccgcccaagcccgggaacatgaccttctacccgagcgcggcggcctgccagcaggcc
gggttccgggcgtgcaagcgctgccgcccggacaccagcccgggctcgcccgagtggaac
cggcgcgccgacctcacggcccgcgccatgcgcctgatcgccgacggcgtcgtggaccgc
gagggcgtgcccggtctcgcctcccgcctcggctacagcacccgccaggtcgaacgccag
ctcctggccgagctgggcgcgggccccctcgccctcgcccgcgcacagcgcgcccagacc
gcacggctgctgatcgagaccaccccgctgcccatggcggacatcgccttcgcggccggc
ttctcctccatccgcaccttcaacgacacggtccgcgaggtctacgccctctccccgagc
gaactgcgcacccgcgcccccaggaaccgccgcgccgccaccgcccccggcgccctgtcc
ctccgcctccccttccgcgcccccctcaaccccgacaacctcttcggccacctcgccgcc
accgccgtacccggcgtggaggagtggcgggacggcgcgtaccgacgcaccctgcgcctc
ccgtacggtcacggcatcgtggccctcaccccgaaccccgaccacatcgcctgccgcctc
accctcagcgacctgcgcgacctgaccgtcgccatcagccgctgccggcgcctgctcgac
ctggacgccgacccgacggcgatcgacgaccagctgcgcgccgacccgctgctcgcgccg
ctcgtcgacaaggcccccgggcggcgcgtgccgcgcaccgtggacgaggcggagttcgcc
gtacgggccgtgctcggccagcaggtctccaccgccgccgcccgcacccacgccgcccgc
ctggtcaccgcgcacggcgatccggtggacgaccccgagggcggcctgacccacctcttc
ccgtcgaccgaggcgctggcggcggtggacccggagaccctggcgatgcccaggactcgc
cgcaccaccttcaccaccctggtcgcccacctggccgacggctcggtcaacccgggcgtc
gagtccgactgggccgagacccgcgcccggctcctggccctgcccggcttcggcccctgg
accgccgacgtcatcgccatgcgcgccctcggcgaccccgacgccttcctccccaccgac
ctcggcatccgccgcgccgccgccgaactgggcctgccctccaccccggccgcgctcacc
gcccgcgcggcggcctggcggccctggcgggcgtacgccgtccagtacctgtgggcgacc
gacgaccacccgatcaacttcctgcccgtataa
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