Streptomyces avermitilis: SAVERM_2450
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Entry
SAVERM_2450 CDS
T00126
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sma
Streptomyces avermitilis
Pathway
sma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAVERM_2450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sma03019
]
SAVERM_2450
03400 DNA repair and recombination proteins [BR:
sma03400
]
SAVERM_2450
Enzymes [BR:
sma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAVERM_2450
Messenger RNA biogenesis [BR:
sma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAVERM_2450
DNA repair and recombination proteins [BR:
sma03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAVERM_2450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
AAA_22
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
BAC70161
NITE:
SAV2450
UniProt:
Q82KF3
LinkDB
All DBs
Position
2987332..2989536
Genome browser
AA seq
734 aa
AA seq
DB search
MSDEDQRPAPSADPRPAPDGDLRTAADAVLARLVGAPTGEARLREDQWRAIEALVAHKRR
ALVVQRTGWGKSAVYFVATALLREQGAGPTVIVSPLLALMRNQVDSAARAGIRARTINSS
NTEEWDTIQAEVAASEVDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGH
DFRPDYRRLRTMLADLPSGVPVLATTATANARVTADVAEQLGTGGGTDALVLRGPLDRES
LSLGVLRLPDAAHRMGWLAEHLNDLPGSGIIYTLTVAAAEEVTAFLRQCGHTVASYTGKT
ENADRLQAEEDLLGNRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRG
VEHAEVLLLPGKEDQAIWEYFASVAFPPEEQVRRTLDVLARADRPLSLPALEPLVELRRS
RLETMLKVLDVDGAVRRVQGGWVSTGVPWTYDTERYAWVAKQRSAEQQAMRDYVTTTACR
MEFLRRQLDDEGAAPCGRCDNCAGGRFHDSVSSGSLDAARGELGRAGVEVEPRKMWPTGL
PAVGVDLKGRIPAGELAAPGRALGRLSDIGWGNRLRPMLTPQAPDGPVPDDVAKAVVGVL
ADWAKGPGGWASAGPDAQPRPVGVVTMASRTRPQLIQSLGARIAEIGRLPLLGSIEYTGE
FAQVHRSNSAQRLKALDGALTVPPALATALKEAGGPVLLVDDATETGWTLAVAARMLRRA
GASGVLPLVLAVQA
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaagaccaacgacccgccccgtccgcagacccgcgccccgccccggacgga
gacctgcgtaccgcggccgatgccgtgctcgcccgcctcgtgggcgcgccgacgggcgag
gcccggctgcgcgaggatcagtggcgggccatcgaggcactggtggcccacaagcgcagg
gccctggtcgtgcagcgcacgggctggggcaagtccgcggtgtacttcgtcgcgaccgcg
ttgctgcgcgagcagggcgcgggtcccacggtcatcgtctcgccactcctcgcgctcatg
cgcaaccaggtggattcggcggcccgcgcgggcatccgcgcgaggaccatcaactcgtcc
aacacggaggagtgggacacgatccaggccgaggtggccgcgagcgaggtcgatgtgctc
ctggtgagcccggagcggctcaacaaccccgacttccgcgaccaggtgctgcccaagctg
gccgccgcgaccggcctcctcgtggtcgacgaggcgcactgcatctccgactggggccac
gacttccggcccgactaccgccggctgcgcaccatgctcgccgacctcccgtccggtgtg
ccggtcctcgccaccaccgcgacggccaacgcgcgcgtcacggccgacgtggccgaacaa
ctcggcaccggaggcggcacggacgcgctcgtgctgcgcggaccgctcgaccgggagagc
ctcagtctcggcgtgctgcgcctgccggacgccgcccaccgcatgggctggctcgccgaa
cacctcaacgacctgccgggctccggcatcatctacacgctcaccgtggctgcggccgag
gaagtcacggccttcctgcgtcagtgcgggcacaccgtggcctcgtacaccggcaagacg
gagaacgcggaccggctacaagcggaggaggacctgctcggcaaccgggtcaaggccctg
gtagccacgtccgccctgggtatgggcttcgacaagcccgacctcgggttcgtcgtccac
ctcggctcgccctcgtcccccatcgcgtactaccagcaggtggggcgcgcgggccgcggt
gtggagcacgccgaggtgctgctcctgccgggcaaggaggatcaggcgatctgggagtac
ttcgcctcggtcgcgtttcccccggaggagcaggtgcgacgcacactggacgtcctggcg
cgggccgaccgaccactgtccctgcccgccctcgaaccgctggtcgaactgcgccgctca
cgtctggagacgatgctcaaggtcctcgatgtcgacggggccgtacggcgtgtgcagggc
ggctgggtctcgacgggcgttccttggacgtacgacaccgagcgctacgcctgggtggcc
aagcagcggtcggctgagcagcaggcgatgcgcgactacgtgacgacgacggcctgccgg
atggagttcctgcggcggcagctcgacgacgagggggcggctccctgtgggcgctgcgac
aactgcgccggaggccgattccacgactccgtgtcgtccgggtcgctcgacgcggcacgt
ggcgaactcgggcgtgcgggcgtcgaggtcgagccccggaagatgtggccgacgggcctg
ccggcggtcggcgtcgacctgaaggggcgtatcccggccggagagctggccgcgcccggg
cgtgcgctggggcggctgtcggacatcggctggggcaaccggctgcggccgatgctcacg
ccccaagccccggacgggccggtgccggacgatgtcgccaaggccgtggtcggtgtgctg
gccgactgggcgaaggggccgggaggctgggcctccgcagggcccgacgcacagccgcgt
ccggtgggcgtcgtcacgatggcctcccgtacgcgtccgcagctgatccagtccctgggg
gcgcggatcgcggagatcggacggctgccgctgctggggtccatcgagtacaccggtgag
ttcgcgcaggtccaccggagcaacagcgcgcagcggctgaaggcgctcgacggggcactg
accgtgccgcccgccctggccaccgcgctcaaggaagccggcggtccggtacttctcgtg
gacgatgcgacagagacgggctggaccctcgcggtggccgcgcgcatgcttcgacgagcc
ggtgcgtcgggggtgttgccgctggtcctggccgtacaagcgtga
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