Sinorhizobium medicae: Smed_2631
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Entry
Smed_2631 CDS
T00555
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smd
Sinorhizobium medicae
Pathway
smd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Smed_2631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smd03400
]
Smed_2631
Enzymes [BR:
smd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Smed_2631
DNA repair and recombination proteins [BR:
smd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Smed_2631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABR61461
UniProt:
A6UCT1
LinkDB
All DBs
Position
2731583..2734180
Genome browser
AA seq
865 aa
AA seq
DB search
MAARNETLTEYNRRRDFTRTKEPKGTVARRSGNRMRFLVQKHAATRLHYDFRLEWEGVLK
SWAVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDPS
KALRKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDEIASKDGESLINENIT
SVVTGRTMEEIAEGRGEKRSRVWHSNKSTAANLRAGAVAEDGNARKRPTRKPSGKLPTFR
APQLATLVTQVPVGDAWLNEAKFDGYRLVCALGGGTARCYTRNGLDWTEKFPVIAAALAE
LDCRSALIDGEVVALSEGGSTFSALQKALATGASTRLYAFDLIELDGKDLSRKPLVERKE
KLEALLQTLGTTSTIQFSEHVRGNGEHVLAAICKAGQEGIIAKEANAPYRSGRTRSWLKV
KCTKRQEFVIGGYSLSDKKGRAFASLIVGTFEGGKLIYRGGVGTGFSKKTMEDLAAAFAS
RKRETSPFDSIPRERMRHSVWLKPDLVAEVDFAEFTAEGHIRHGSFEGLREDKEAKAVKL
ETSKPAEVESGTTTKGKSTTKARRTSAAQGDADVLGIRISHPDRVLFKGQGITKIDLARY
YAIVADRMLPFAADHPVSLVRCPQGGERQCFFQKHASDGFPDAIREVPITESSGDTEDYM
YIHDAKGLVAAVQMGTLEFHIWGARTDRLEKPDRLVFDLDPDPSVDFATVKAAAVELRDE
LAGIGLKTVPMVTGGKGVHVIVPLRPHAEWDEVKGFAKALAQSFAERDPDHFVATMSKAK
RKGRIFIDWLRNDRGATAIAPYSTRARAGGPVATPVGWEELESLDAANGFHIPEILARIE
AGTDPWRDIGKISQSLTKKILNSVA
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcgcaacgaaacacttaccgaatataacaggcgccgtgacttcacgcggacg
aaggagcccaagggaaccgtcgctcgtcgcagcgggaacaggatgcggttcctggtccag
aagcacgccgcaacccgcctgcattacgactttcgcctggaatgggagggcgtgctgaag
agctgggcggtgacgcgcggcccaagcctcaaccccgaggacaagcgccttgccgtccgc
accgaagaccacccgcttgcttatggcgacttcgaaggaaccatcccgaagggagaatat
ggcggcggcaccgtgatgctctgggatacgggctggtgggagccggaggatgacccgtcc
aaagccttgaggaagggcaagctctccttcaagctgcatggcagccgcatgaagggaggc
tgggctctggtacgcatgcgcccacgcgaaggcgagaagcgcgagaactggctgctcgtc
aaggaaacggatgagatcgcctccaaggatggcgagagcctgatcaacgaaaacatcacc
agcgtcgtcaccggtcgcaccatggaagagatcgccgaaggcaggggcgaaaagcgctca
cgcgtctggcactcgaacaaaagcacggcggccaatctcagggccggcgcggtcgctgaa
gacggcaatgcacgcaagcgccccacgcgaaagccctcaggcaaactgcctaccttccgg
gcgcctcagctggcgacgctggtgacccaggtacccgtgggcgacgcgtggctgaacgaa
gccaagttcgacggctaccggcttgtttgcgccctgggcggcggtactgcccgctgctac
acgcgcaacggactcgattggaccgaaaagttcccggtcattgccgcagcccttgccgaa
ctcgactgccggtccgcccttatcgacggcgaagtcgtagcactgtcagaaggcgggtcc
actttctccgccctgcagaaagcgcttgcaacaggggccagcacacggctttacgcgttc
gatctcatcgagctcgacggcaaggatttgagcagaaagccgctcgtggagcgcaaggaa
aagctcgaagcgctgctccaaacgctgggcacgacctcgaccatccagttcagcgagcat
gttcgcgggaatggcgagcacgtgcttgccgccatatgcaaggctggtcaggagggtata
atcgccaaggaggcgaacgccccctaccggagcgggcgcacccgaagctggctcaaggtg
aaatgcaccaaacgccaggaattcgtcatcggcggctacagcctgtcggacaagaagggg
cgcgccttcgcctcgctcatcgtcgggactttcgaaggcgggaagctgatctatcgtggc
ggggtcggaaccggtttcagcaaaaagacgatggaggacctcgccgcagccttcgcctca
cgcaaaagagaaacgtcgcccttcgacagcataccgcgagagagaatgcgacattcagtt
tggctgaagccggacctggtggccgaggtagacttcgccgaattcacggctgaaggccat
atccgccacggttcgttcgagggattgcgcgaggacaaggaggcaaaggccgtgaaactg
gagacatcgaagccagcggaagtggagtccgggaccaccaccaagggtaaatccaccaca
aaggcgcgcaggacatcggccgcacaaggtgacgccgacgtcctcggcatccgtatttcg
catccggaccgcgtcctgttcaaaggtcagggcatcaccaagatcgatcttgcccgctat
tatgcaatcgtcgccgacaggatgctcccctttgccgccgaccatcccgtctcgctggtg
cgctgcccgcagggcggcgagcggcagtgcttcttccagaagcacgcaagcgacggcttt
cccgatgcgatcagggaagtgcccatcaccgaatcgtcgggagacaccgaagactacatg
tatatccacgatgccaaggggctcgtcgcagcagtacagatggggacgctcgaatttcac
atctggggcgcaaggaccgatcggctggagaaacccgatcggctggtcttcgatctcgac
cccgatccaagcgtcgacttcgcaaccgtcaaagcagcggccgtagagcttcgcgacgag
ctcgccgggatcggcctgaaaaccgtgccgatggtgacgggcggcaagggagtccacgtg
atcgtgccgctccgcccccatgccgaatgggatgaagtaaaagggttcgccaaggcgctc
gcgcaatcttttgccgagcgcgatccggatcatttcgtcgcgaccatgtccaaggccaag
cgcaaggggaggattttcatcgactggctgcgcaacgaccgcggcgccacggcgatagcc
ccctactccacccgtgcgcgcgccggcggaccggtcgccactccggtcggctgggaggag
cttgaaagcctcgatgccgccaatgggtttcatattcccgaaattctcgcacgcatcgag
gccggaaccgatccctggcgggacatcggcaagatcagtcagtcgctgacgaagaagatc
ctgaactcggtcgcgtga
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