Sinorhizobium meliloti GR4: C770_GR4Chr1297
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Entry
C770_GR4Chr1297 CDS
T02405
Name
(GenBank) putative hydrolase of the metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C770_GR4Chr1297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smeg03019
]
C770_GR4Chr1297
Messenger RNA biogenesis [BR:
smeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C770_GR4Chr1297
BRITE hierarchy
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Ortholog
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Gene cluster
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Motif
Pfam:
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Lactamase_B_3
Motif
Other DBs
NCBI-ProteinID:
AGA06254
LinkDB
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Position
1366530..1368197
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AA seq
555 aa
AA seq
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MAQDEELVFLPLGGVGEIGMNLGLYGYGRPGHRQWIMVDCGVTFPGPELPGVDLVLPDIA
FLAEQRRNLKAIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAFEKSRSEIP
ITIFKQGDRINVGPFSVEAVGVNHSIPEPMALVIRTQLGTVVHTGDWKIDLEPSLGPLTD
ESRFRQIGEEGVLALVCDSTNALREGVSPSERQVSESLAKIIADAEGRVGITTFSSNVGR
IRSVAEAAEAAGREVLLLGSSMKRVVDVARDVGLMEGVKPFLAEDEFGYIPRDKVVVILT
GSQGEPRAALAKIARDEMRNVAFSAGDTIVFSSRTIPGNEKAINDIKNGLIEQGIHIITD
SEALVHVSGHPRRTELQQMYQWVKPQILVPVHGEAAHLTAHAELGLQSGIPSVPRLRNGE
MLRLAPGPAEVIDEAPHGRIYKDGTLIGDFEEMGIGERRKLSFAGHVSVSVVLDSRYDFL
GDPDVVPIGLPEFDDEGEAMEDTLYDAVLGAVESIPRAKRKDLAMLQEAVRRAVRSTTNQ
VWGKKPVVTVFITKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggatgaagaactggtgttcttgccgctcggcggcgtcggcgaaataggcatg
aatctcggcctttacggttatggaaggccaggccaccgccaatggatcatggtcgattgc
ggcgtgaccttccccggcccggaattgcccggcgtagatctggttctgcccgatatcgcc
tttctggccgaacagcgccgcaacctgaaggcgatcatcatcacgcatgcgcatgaggac
cattacggggctctgaacgatctgtggccgggcctgaacgttcccgtctacgcctcgccc
tttaccgcgggcatgctggaggccaagcgcgcattcgaaaagtcccgcagtgagatcccg
atcacgatcttcaagcagggcgaccgcatcaatgtcgggcctttcagcgtcgaagccgtg
ggggtcaatcattcgatccccgagccgatggcgctcgtcatccgcacgcaactcggcacc
gtcgtgcacacgggcgactggaagatcgatctcgagccttcgctggggcccctgaccgac
gagtcgcggtttcgccagatcggggaggaaggcgtcctcgcgctcgtctgcgattcgacc
aatgccttgcgcgaaggcgtgtcgccgtccgaacggcaagtctccgaaagtctcgccaag
atcattgccgatgccgagggccgcgtcgggatcaccaccttctcctccaatgtcgggcgc
atccgctctgttgcggaagcggcggaggctgcggggcgggaggtgcttctactcggcagt
tcgatgaagcgcgtcgtcgacgttgcgcgcgatgtcgggctcatggaaggcgtgaagccg
ttcctcgcagaggacgagttcggctacatcccgcgcgacaaggtcgtggtcatcctgacg
ggcagccagggcgagccgcgcgcggcccttgccaagatcgctcgcgacgagatgcgcaac
gtggcgttttcggccggcgacacgatcgtattttcgtcgcgcaccatccccggcaacgaa
aaagcgatcaacgacatcaagaacgggcttatcgagcaaggcatccacatcatcacggat
agcgaggcgctggtgcatgtttccggccatccgcggcgcaccgagctccagcagatgtac
caatgggtgaagccgcagatcctcgtgccggtgcatggcgaggcggcgcatctgacggca
catgcggagctcgggctgcaatcgggcatcccgagcgtgccgcggctgcgcaatggcgaa
atgctacgacttgcgccgggccccgcggaagtcatcgacgaggcgccgcacggccgcatc
tacaaggacggcaccctcatcggcgatttcgaagagatggggataggcgaacgccgcaag
ctttcctttgccggccacgtctccgtcagtgtcgtactcgacagccgctacgactttctg
ggtgacccggacgtcgtgccgatcggccttccggaattcgacgacgaaggcgaggcgatg
gaggacacgctctatgatgcggtgctcggcgccgtggaaagcatcccgcgggcaaagcgg
aaggacctcgcgatgctgcaggaagccgttcgccgcgccgtgcgcagcaccacgaaccag
gtctggggcaagaagccggtcgtgacggtttttatcacgaaggtctga
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