KEGG   Sinorhizobium meliloti GR4: C770_GR4Chr2868Help
Entry
C770_GR4Chr2868   CDS       T02405                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
smeg  Sinorhizobium meliloti GR4
Pathway
smeg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:smeg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C770_GR4Chr2868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:smeg03400]
    C770_GR4Chr2868
Enzymes [BR:smeg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C770_GR4Chr2868
DNA repair and recombination proteins [BR:smeg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C770_GR4Chr2868
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AGA07774
LinkDB All DBs
Position
2997769..3000366
Genome map
AA seq 865 aa AA seqDB search
MAARNEPLSEYNRRRDFTRTSEPKGAVARRSGDNRMRFLVQKHAATRLHYDFRLEWEGVL
KSWAVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDP
SKALKKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDDVASDDGESLINENI
TSIVTGRTMEEIAEGRGEKRARVWHSNKSISANLKAGAIAENGNAGKRATRKASGKLPAF
KAPQLATLVTKVPAGDAWLNEAKFDGYRLVCAVGAGTVRCYTRNGLDWTEKFPAIAAALA
ELDCQSALIDGEVVALSEGGSTFSALQKALRTGASTRLYAFDLIELDGKDLSRKPLVERK
ERLEALLQTLGATSTVQFSEHVRGNGEHVLSAICKAGQEGIIAKEADAPYRSGRSRSWLK
VKCTKRQEFVIGGYTPSSKKGRAFASLLVGTFEGGKLIYRGGVGTGFSGKTMEDLAAAFA
KRKRDTSPFDSVPRERMRNSVWLEPDLVAEVDFAEFTADGHVRHGSFEGLREDKEARAVK
LETPKPAEAEPETAKSKSSARTRKTPPVQGDADVLGIRISHPDRVLFEGQGITKIDLARY
YAVVAERMLPFAADHPVSLVRCPQGGERHCFFQKHASDGFPEAIREVPITESSGDTENYM
YIHDAKGLVAAVQMGTLEFHIWGSSIDRLEKPDRLVFDLDPDPSVDFETVKAAALRLRDE
LAEIGLKTVPMVTGGKGVHVIVPLRPHAEWEEAKGFAKALARSIAERDPDNFVATVSKAK
RKGKIFIDWLRNDRGATAVAPYSTRARSGGPVATPVGWDELQGLEAANGFQIPDIIERIE
AGTDPWREIGKISQSLTKKILNSVE
NT seq 2598 nt NT seq  +upstreamnt  +downstreamnt
atggccgctcgcaatgaaccgctttccgaatataaccggcgccgcgatttcacgcggacg
agcgaacccaagggagcggtcgctcggcgcagcggggacaacaggatgcggttcctggtt
cagaagcacgctgcgacccgcctgcattacgacttccgcctggaatgggagggcgtgctg
aagagctgggcggtcacacgcggcccgagcctcaaccccgaagacaagcgcctggccgtg
cgtaccgaagaccacccgcttgcctatggcgacttcgaaggaacgataccgaagggagag
tatggcggcggtaccgtgatgctctgggataccggctggtgggagccggaggatgacccg
tcgaaagccctgaagaagggcaagctctccttcaagctgcatggcagccgaatgaagggc
ggctgggcgctggtgcgcatgcggccacgcgaaggcgaaaagcgcgagaactggctgctc
gtcaaggaaacggacgatgtcgcctccgatgacggcgagagcctgatcaacgagaacatc
accagcatcgttaccggccggacgatggaggagatcgccgaaggcaggggcgagaagcgg
gcgcgggtctggcattccaacaaaagcatctcggccaatctcaaggccggcgcgatcgcc
gaaaacggcaatgcaggcaagcgcgcgacgcgaaaagcctccggcaagctgcccgccttc
aaggcaccgcagctggcgactctggtgaccaaggtgcccgccggcgacgcatggctgaac
gaagccaagttcgacggctaccgtcttgtctgcgccgtcggtgccggcaccgtgcgctgc
tacacgcgcaacggcctcgactggaccgagaagttcccggcaattgccgccgcccttgcc
gaactcgactgccagtccgctctgatcgatggcgaagtggtggcgctttcggaaggcgga
tcgaccttctcggccctgcagaaggcgcttagaacgggggccagcacacggctttacgct
ttcgatctcatcgagctcgacggcaaggatctgagccggaagccgctcgtggaacgcaag
gaacggctcgaagcgctgctccaaacgctcggcgccacctctaccgtacaattcagcgag
catgtccgcggcaatggcgagcacgtgctttccgcgatatgcaaggccggccaggagggt
ataatcgccaaggaggccgatgccccctatcgcagcgggcgcagccgaagctggctcaag
gtgaaatgcacgaagcgccaggagttcgtgatcggtggctataccccgtcttcaaagaag
gggcgtgccttcgcctcgctgctcgtcgggaccttcgaaggcgggaagctgatctaccgt
ggcggcgtcggcaccggtttcagcggaaagacaatggaggacctcgccgcggccttcgca
aagcgcaagcgcgatacgtcgcccttcgacagcgtgccgcgagagagaatgcgaaattcg
gtatggcttgagccggacctggtggcggaggtggatttcgccgaattcacggccgacgga
catgtccgtcacggttcattcgagggattgcgcgaggacaaggaggccagggccgtgaaa
ctggagacaccgaagccggcagaagcggagccggagaccgccaagagcaaatcttccgcc
aggacgcgcaagacgccgcctgtgcagggagacgccgatgtcctcggcatccgcatctcc
catccggaccgggtgctcttcgaaggccagggcatcaccaagatcgatctcgcccgctat
tacgccgttgtcgccgagaggatgctcccctttgccgccgatcaccccgtttcgctggtg
cgctgcccgcagggcggcgagcggcactgtttcttccagaaacacgcaagcgacggcttt
cccgaggcgatccgggaagtgccgattaccgagtcatcgggcgacaccgagaactatatg
tacatccacgatgccaagggcctcgtcgccgccgtgcagatggggacgctcgagtttcac
atctggggttcaagcatcgaccggctggagaaacccgaccgtctggtcttcgatctcgac
cccgatccgagcgtcgacttcgagacagtcaaggcggcagccctcaggctccgcgacgaa
ctcgccgagatcggcctgaaaacagtgcccatggtgaccggcggcaagggcgtccacgtc
atcgttccgctccgcccccatgccgaatgggaggaggccaaaggcttcgcgaaagcgctc
gcgcgatctatcgccgagcgcgatccggacaatttcgtcgccaccgtgtcgaaggcgaag
cgcaagggaaagattttcatagactggctgagaaacgatcgcggcgccacggcggtcgcg
ccctattccacccgcgcgcgctccggcggaccggtcgccacaccggtcggctgggacgaa
ctccaaggcctcgaagccgccaacgggtttcagattccggacattatcgagcggatcgaa
gccgggaccgatccgtggcgggagatcggcaagatcagtcagtcgctgacgaagaagata
ttgaactcggtcgaatga

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