Sinorhizobium meliloti GR4: C770_GR4pC0120
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Entry
C770_GR4pC0120 CDS
T02405
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smeg
Sinorhizobium meliloti GR4
Pathway
smeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C770_GR4pC0120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smeg03400
]
C770_GR4pC0120
Enzymes [BR:
smeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C770_GR4pC0120
DNA repair and recombination proteins [BR:
smeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C770_GR4pC0120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AGA08861
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All DBs
Position
pRmeGR4c:complement(130881..132710)
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AA seq
609 aa
AA seq
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MDRRAKNPRPQAGKQAASHRRLANMGAKKATRPAFIEPCHPTLKKRPPDGPEWLHEIKFD
GYRAQLHIRGRKVTIYTRTGLDWTKEFKSIATAAEALAGHDLVMDGEATVFGKTGLPDFQ
ALRRELAKPSSPHLTFQAFDLLYLDGYDLRRMPLSERKRVLRELIGDRAGAVAYVDHLDI
DEGDEVYEHACMMGLEGIVSKRKDAPYRSGRQEIWTKTKCTKRAAFPIIAFVEKLGAQPR
RIASLYLGRWEGDRLVYAGKAQTGYTLAAAREVRERLNPLIIGKSPLSHPINKPKATWVE
PRVYAEVDYSGVTDDGLLREPVFKGLQKVSRDAPKKAASVTPTSGPVPRENILQLLPDAV
VPSKEELAAYWTRVADRALHFLGGRPLKLVRHVHGTTFYHKGPLPPIPPEVHQLRIEKRE
GGEGVRLWVDDLAGLLGLVEIGAVELHPWAATVDDIEHADTLIFDLDPGEAVAWEFVVET
ALRLRELLQAEGLQTWPKLTGGKGVHLMAPLPAKMAHNAVHAYAKRLAQQFASSDPERYV
TSAQLSRRPGKLFLDYLRNGRGTTAVGTYSPRARSGFPVAAPVAWKEIERGIKPDTFTMS
RPPRRRRAM
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
ttggatcggcgtgccaagaacccgcggccgcaagccggcaaacaagcggcctctcaccgt
cgtctggccaatatgggcgcgaagaaggccacccgccccgccttcattgagccttgtcat
ccaacgctgaagaaacgaccgcccgacggtccggagtggttgcatgaaatcaagtttgat
ggctaccgagcgcaactgcacatccgtgggcgcaaggtcacgatctacactcgaacgggt
cttgattggacaaaggaattcaagtcaatcgcgacggccgcggaggcactcgcaggccac
gaccttgtgatggacggcgaggctaccgttttcggcaagacgggccttcccgatttccaa
gcactccggcgcgagctcgcgaaaccctcatcgccgcacctgacgttccaggcgttcgac
ctgctctatttggacggatacgacctccgacggatgcccctgagcgagcgcaagcgtgtc
ctgcgcgagctcataggcgaccgcgccggcgccgtcgcctatgtcgaccatctcgacatc
gatgaaggagacgaggtctacgagcacgcctgcatgatgggtctggaagggatcgtgtcc
aagcgcaaggacgcaccctaccggtcgggacggcaggaaatttggacaaagacgaagtgc
acgaagcgcgcggcatttcccatcatcgccttcgtcgagaagctcggcgcccagccgcgc
cggatcgcctcgctctatctcgggcgctgggagggcgatcgcctcgtctatgccggcaag
gctcaaacaggctacacgcttgcggccgcgcgcgaggtgcgggagcggctcaacccgctg
atcatcggcaagagccccctctcccatccgatcaacaagccaaaggcgacgtgggtcgag
ccacgggtctacgctgaggtcgactacagcggcgtgaccgacgacggcctgttgcgcgag
ccggtcttcaagggcctgcagaaagtctccagggatgcgccgaaaaaggcagcgagcgtc
accccgacctccggcccggttccccgcgaaaacattttgcagttactgccggacgcggtt
gtgccctcgaaagaggagcttgcggcctattggacgcgcgtggcagatcgcgcccttcat
ttcctcggcggccgtccgctgaagctcgtgcggcacgtccacggcaccaccttctaccac
aagggtccgctgccaccgatccctccagaggttcatcagctccgcatcgagaagcgcgag
ggcggcgaaggggtgaggctttgggtcgacgatcttgccggtttgctgggccttgtcgaa
atcggcgcggtggaactgcatccctgggcggcgaccgtcgacgatatcgagcacgccgac
acgctgatattcgacctggatcccggcgaagccgtggcgtgggagttcgtcgtcgagacc
gcgttgcggctacgggagctccttcaggcggagggtctccagacttggccgaagctcacc
ggcggcaagggcgttcatctaatggcgcctctgccggcgaagatggcgcacaatgctgtg
cacgcttatgccaaacgcctggcgcaacagttcgccagcagcgatccagagcgctacgtc
acgtcggcacagctttcgcgccggcccggcaaacttttcctcgattacctcaggaacggc
cgtggcaccaccgccgtcggcacctattcgcccagagctcgctccggctttcccgtcgcg
gcacctgtggcctggaaagaaatcgagcgcgggataaaaccggatacattcacaatgagc
cgtccgccgagacgacgtcgcgcgatgtga
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