Silurus meridionalis (southern catfish): 124385123
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Entry
124385123 CDS
T08004
Symbol
atg4c
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04136
Autophagy - other
smeo04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124385123 (atg4c)
04136 Autophagy - other
124385123 (atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
smeo01002
]
124385123 (atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
smeo04131
]
124385123 (atg4c)
03029 Mitochondrial biogenesis [BR:
smeo03029
]
124385123 (atg4c)
Peptidases and inhibitors [BR:
smeo01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
124385123 (atg4c)
Membrane trafficking [BR:
smeo04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
124385123 (atg4c)
Mitochondrial biogenesis [BR:
smeo03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
124385123 (atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
124385123
NCBI-ProteinID:
XP_046704218
LinkDB
All DBs
Position
1:complement(26332598..26349247)
Genome browser
AA seq
488 aa
AA seq
DB search
MSCRHLASCLYRLGSGRARGDGFRSVPGAMEMKGNDEVEKIKSKFMSAWNNVKYSWVLKS
KTSFSRNSVVFLLGKCYHFKADDEDSPTESCSTDLFDDDYAVIGNVEGFRRDFASRIWLT
YRDDFAALPESTITTDCGWGCTLRAGQMMLAQALILNFLGRDWTWPDALSLEPLDTETRT
SSAARKLVASLEASFQGDRLRFPSCQPQCGAEEADAHLKEVYHRTVVTWFGDTLSAQLSV
HRLVHLGMTSGKRAGDWYGPGVVAHILRKAVEEATDPELQGVTVYVAQDCTVYSADVLES
HSVQVDTRSVPEGMATDNRAVIILIPVRLGGEKINPEYFSFVKAILSLEYCIGIIGGKPK
QAYYFVGFQDDSMIYMDPHYCQSFVDVSTSNFPLQSYHCPSPKKMPFIKMDPSCTIGFYS
KSVQDYERISGELSKLLQPSSKEKYPAFTFMRGHGRDYELSVPMEKKEWPFIKDTRNPGA
TAGDFVLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgagttgtaggcacctggcttcctgtctttaccgcctaggctctggccgtgcgcgcggt
gatgggttccgatccgtgccaggtgcaatggagatgaaagggaacgacgaggtggagaaa
ataaagtcgaagttcatgtcggcgtggaacaatgtaaaatacagttgggtgctgaaatca
aagacgtcctttagtcgcaattctgtggtcttcctgcttggcaaatgctatcacttcaag
gcagacgatgaagacagccccacagagagctgcagcacagatttatttgatgatgattat
gctgtcattggcaatgtggaaggatttcggagggatttcgcatctcggatctggctcact
tatcgggatgattttgctgcactcccggaatcgaccatcaccacagactgtggttggggc
tgcactctcagagccgggcagatgatgctggcccaggcactcattctaaatttcctggga
agagactggacctggccagatgcgctgtccttggagcctctggacaccgagacaaggacg
agcagcgcagcacgaaaactggtcgcctcattagaagcttcattccagggagataggctg
agattcccatcttgccagccccagtgtggggcagaagaagctgacgctcacctgaaagag
gtgtaccatcgcactgttgtgacctggtttggagatactctgtctgcccagctcagtgtt
cacaggctggtccatctgggtatgacctcagggaaaagagcaggagattggtatggccct
ggtgtagtggcacacatactcaggaaagccgtagaagaggctacagatcctgaactgcaa
ggtgtgactgtttatgtggcacaggattgcacagtgtacagcgctgatgttctcgagagt
cattcagtgcaggtggacacacgctcggttcctgagggaatggccactgacaacagagcc
gtcatcattctcattcctgtcagactcgggggagagaagattaaccctgaatacttcagc
tttgtcaaggccattctgagcttggaatactgtattggtatcattggagggaaacccaag
caggcctactactttgttggatttcaagatgacagcatgatttacatggaccctcattac
tgtcagtcttttgtggatgtcagcacaagcaattttcctctgcagtcatatcattgccca
tcaccaaagaagatgcctttcattaaaatggatccaagctgcactattgggttttactcc
aaaagtgttcaggattatgaaagaattagtggtgagctgtctaagcttctgcagccgtca
tcgaaagagaagtacccggcatttacctttatgagaggacacgggagagattatgaactg
tctgttcccatggagaagaaagaatggcccttcatcaaggacacacgcaatcctggggcc
accgcaggggactttgtgctgctgtaa
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