Silurus meridionalis (southern catfish): 124398916
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Entry
124398916 CDS
T08004
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
smeo
Silurus meridionalis (southern catfish)
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
smeo00536
]
124398916 (col13a1)
Glycosaminoglycan binding proteins [BR:
smeo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124398916 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
124398916
NCBI-ProteinID:
XP_046725397
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Position
2:complement(18894713..18969183)
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AA seq
748 aa
AA seq
DB search
MEQDTKVCRDSPTERTCAEHPCKRRMEVCGAVAVCVALCVLSLGVCVLVYLRTSELQDRV
NSLEKHREPQHSEWLFLEQVEPVLLKRLDQMLEEKLASRLPKTRETRDVSHACLCPPGPP
GPPGRAGFPGDKGSMGIPGRMGLKGNTGDKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPG
PIGLDGKPGQNGQKGDMGPPGPRGIPGEPGLKGEKGVCGDYTHRKRRIVHTCAGGQATML
PITVRNMPSISPLILKRLKQGEPGALGPPGPPGPPGPPGIPGLIGANGPPGKPGEPGKPG
KDLRMLTGMKGEPGIQGVPGQKGERGETGFSGPEGPRGSKGDLGQKGEEGKMGLAGEKGE
KGERGMPGIPGKQGVKGELGFPGTPGFKGQAGIPGIPGKRGYKGEKGELSSSGVSIKGEP
GVPGLPGSKGQKGDQGIKGDTGSEGHPGPRGPPGATGEPGKMLINNNENDIRNVQLMGPP
GLPGPPGLPGSKGDVGLPGPPGLDGEKGPRGKVGEPGPIGPPGPEGPRGEGGIIGLPGPK
GDKGDLGPSGSPGLDGPTGEKGSAGPPGPIGLPGSMGQKGESGERGKNGDQMYGPPGPPG
PAGPVGPMGPPGLSGPKGEPGLGVRGEKGSLGQKGDKGDRGHLGLPGAHGLDGKPGPVGL
IGPPGISGPAGPKGERGVKGEMGVAGPTGPQGIPGLVGPPGIKGNRGERGKRGNRGAKGD
KGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggacaccaaagtttgtcgagattctcctacagaaaggacttgcgctgagcat
ccgtgtaaaaggcggatggaggtgtgtggtgcggtggcggtgtgtgtcgcgctctgtgtc
ctttctctcggggtgtgtgtgctggtgtatttgcgcacctcggagctacaggacagagtt
aacagcctggagaagcacagagaacctcagcattcagaatggttgtttctcgagcaggtg
gaaccagtgctcctaaagcgcctggatcagatgctggaggagaagttagcgtctcgtctg
ccgaagaccagagagactcgggatgtctcccacgcctgtctgtgtccaccaggacctcct
ggtcctcctggacgagctggctttccgggagacaaaggatcaatgggcattcctggaaga
atgggcttaaagggaaacacaggggacaagggagctccaggggagcctggtctatctatc
attggcccacgaggacctcctggtcaaccaggcactagaggatttcctggctttccgggt
cccattggcttggacggcaagcctgggcaaaatggtcagaaaggggacatgggcccaccc
ggtcccagaggaattcctggtgaacctggtctaaagggtgaaaagggtgtgtgtggtgat
tatacacatcggaaacggcgtattgtccacacatgtgctggaggacaggccacaatgttg
cccatcaccgtgcgcaacatgccctcaataagccctctaattctaaagcgcctcaagcag
ggtgagcctggagcacttggaccaccaggccctcctggccccccagggcctccaggtatc
ccaggattgattggtgctaatgggccaccgggaaaacctggagaacctggaaaaccggga
aaagatcttaggatgttgacaggaatgaagggagaaccaggtatacaaggcgtaccagga
cagaagggtgaacgtggtgagacaggattctctggtcctgaaggccccaggggatccaaa
ggggatctaggtcagaagggagaggaggggaagatgggtcttgcaggagaaaaaggagag
aagggtgagcgagggatgcctggaatacctggaaaacaaggagtgaagggagaacttggt
tttccagggactcctggttttaagggtcaggcaggtattcccggtattcctgggaagcgg
ggctataagggtgaaaagggggagctgagttcttcaggagttagcattaaaggagaacca
ggagtgccaggactgcctggttccaagggtcaaaaaggtgatcaaggcattaagggtgat
accggctctgagggtcatcctggaccgagaggtcctccaggtgcaacaggagaaccagga
aaaatgttaatcaacaacaatgagaatgatattcgcaatgtacaactaatgggcccacct
ggtctacctgggcctcctggattacctggttcgaagggtgacgttggactacctgggcct
cctggccttgatggagaaaagggtcctcggggaaaagtgggagagcctggacctattggt
ccacctggacctgaagggccacgaggagagggaggaattattggcttacctggacctaaa
ggggataaaggtgacctgggtccctctggttcacctggtttagatggccctactggtgaa
aaagggtctgcagggcctcctgggcccattggattacctggctcaatgggtcagaaaggt
gaaagtggagagagggggaaaaatggagaccagatgtatggcccaccaggccctccagga
cctgcagggccagtggggccaatgggacctccaggactgtcagggccaaagggggagcca
ggtctgggtgtaagaggagagaaaggatcactcggacaaaaaggagataaaggagacagg
ggtcatcttggactaccgggggctcatggtttagacggcaagcctggtccagtgggcctt
ataggaccgcctggtatatctggaccagcaggaccaaaaggagagaggggtgtaaaagga
gaaatgggagtagcaggaccaacagggcctcaaggcatccctggcttagtaggaccacca
ggaataaaaggaaaccggggggaaaggggcaagagaggcaacaggggggccaaaggggat
aagggagaccaaggagccccaggattagatgccccttgtcctttgggtgatgatggtctc
ccagtaccaggatgttggaataaatga
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