Silurus meridionalis (southern catfish): 124400367
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Entry
124400367 CDS
T08004
Symbol
itgb4
Name
(RefSeq) LOW QUALITY PROTEIN: integrin beta-4
KO
K06525
integrin beta 4
Organism
smeo
Silurus meridionalis (southern catfish)
Pathway
smeo04510
Focal adhesion
smeo04512
ECM-receptor interaction
smeo04810
Regulation of actin cytoskeleton
smeo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
smeo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124400367 (itgb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124400367 (itgb4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
124400367 (itgb4)
04810 Regulation of actin cytoskeleton
124400367 (itgb4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
smeo04147
]
124400367 (itgb4)
04515 Cell adhesion molecules [BR:
smeo04515
]
124400367 (itgb4)
04090 CD molecules [BR:
smeo04090
]
124400367 (itgb4)
Exosome [BR:
smeo04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
124400367 (itgb4)
Exosomal proteins of bladder cancer cells
124400367 (itgb4)
Cell adhesion molecules [BR:
smeo04515
]
Integrins
Integrin beta subunits
124400367 (itgb4)
CD molecules [BR:
smeo04090
]
Proteins
124400367 (itgb4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Pur_ac_phosph_N
Calx-beta
Integrin_B_tail
EGF_2
I-EGF_1
SEA
EGF_Tenascin
I-set
Motif
Other DBs
NCBI-GeneID:
124400367
NCBI-ProteinID:
XP_046728105
LinkDB
All DBs
Position
17:29032141..29058417
Genome browser
AA seq
1956 aa
AA seq
DB search
MVSVPIAVQRVKQPAALRVCRPDLAAYCSDEVFGFDRCDLLENLNSSSCAKIVSVHSSRS
MVQNIGINKNMKHSQVAPQQMRMTLLPGEEHELEIEVFEPARGPLDLYILMDFSNSMSDD
LDNLKRMGDELAQLVGTLSDDYTIGFGKFVDKVTEPQTDMRPSKLKEPWANSDPPFSFKH
VINLTSDISNFRHNLQGERISGNLDAPEGGFDAILQAAVCQSQIGWRKHSTHLLVFSTES
AFHYEADGINVLAGILQRNDEACHLDSNGLYTHATRQDYPSVPTLVRLLVQNNIIPIFAI
TNHSLSYYEKLLHYFPIAELGVLTDDSSNILNIIKNAFDSIRSKISIQAENKPRAIGAQI
LSASGVASDYGNFRIQPGEIGKFKVRLNAKTSVSDKPVCSLNTNDREGMIRVKPTTFSSA
LHIQTSVLCETCECELTPTRKAQRCNGNGDLVCGTCRCYDKWLGPYCNCSSQVSSDSGGC
VAPGTSKPCNERGDCLCGTCLCYNPNQYDGQFCQYDRSQCGRSGGFLCNDRGRCFMGKCV
CDSGWTGNACECPLSNATCLDNKGGLCNGHGXCKCGRCECEYSGLVLGTTCEPNFQAQLG
XCESRRSCVQCQAWNTGELKGDKCKSCPFTIXKVDELKDRDKVIETCEYRDEEDDCTYYY
TVNYPPNPTDKEHEVEVLKKKECPPGGFLWLIPLIMFLMLLLGLLLLCCWKYCACCKACL
ARFCACCPCCAMGRMVGFKEDHYMLRQSLLSSDHLDTPMVRTGPPKSTDVVRWKVKDNVH
RGPNHPQNQTQPNPKEIIDFPLTLRLLRQFSEELSHPEARNTETLKQQVEENLNNVYRQI
PGAQRVQKTRFRTQRNAGKRQNNTIVDTVLSAPRSSFHDILTLTDKQVQAGNFSEMKVVP
GFYTVATDREAMGAVELQXGVESVDVRVPLFIKDEDDDKKQLLVEAVDVPVGIATIGKRH
VNITVIKEHAKSILTFLQPSYTFSRQDGVANIPISRDIIEDGRTQVTYCTRDLTAKDKKD
YLSVDGDLMYQAGETQKMVPVKLLELGEGDSLIDKQPKQFVMDLSNPRQGAKLGKYPRTT
INIADKPDPSVIMFKNSTQTFNISDALYTVPVIRTQGLENPSTVTWRTISSRFNLSGPLK
FAPGEMEKNIVIDTRTQQVPSKPENFQLELYDPSSNSLVRDRKTTQVNIIDPKGDFFITS
GTNPIKASSPTGRILPPANIETVATGPKKIRLNWNPQSGAKGYKVKYWIYGDPEADAQVV
DVKSTHAELTNLYPFCDYEMRVCSYNAQGDGDYSDIVQCQTLEDVPSEPGRLAFNVIGPT
VTQLSWAEPAEPNGVITDYEVVYTPINEDSKPTGPDKKVKIDNPKKRMLLIENLQPSQTY
RYKVRASNKVGWGPYRDATINLATQPHRPMSIPIIPDIPIVDAEAGDDYDSFLMYSNEVL
RSPTASSRPSVSEFSEGKRWKHVKLVGSDLDLRTVSWKLPADVIPTRSTGTLEKDDLLAT
AHSQSPHPTGLCKNPLHGVRFENSVQGGHYQNLLQDQIMNGKWDQGFLFPGGGSGSLSRN
ISTTNTYITSKGDSVPRKHDIHTEDVILRKRSENRNYYDSDGIRDSIVMSDLTGGFSDIL
SGSSFSQTTTTSYSLNSRVHNRSDDINEALQNLDRVLQDTRLQRGVPETPSRLVFSALGP
TALKVSWQEPHCEKPISGYCVLYQLLSGGEMKRMDITNPAQNSVVVQDLLPNQSYLFKVK
AESQEGWGPEREGVITIESAVDPKSPLSPVPGSSFTLSTPSAPGPLVFTALSPETLQLSW
DKPRKPNGEILGYVVTCEQLHGGGDQRSFQLSGNSATSLTVSDLTENVPYKFKVQAQTTQ
GFGPEREGIITIESQDGSMGQYGGQSVMRREVFNLPSQSSTHTTHTMFTEPFTTPEGIMM
SSRQVTQQMSGSVTRQVEMVQRGVTSTVTRKQYYEA
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggtatcagtgccaatcgctgtgcagcgagtaaagcaaccagctgctctgcgtgtctgc
agaccggatttggctgcatactgctctgatgaggtgtttgggtttgatcgttgtgacctg
ctggagaacctgaactctagcagctgtgctaagatcgtatcagttcacagctccaggtcc
atggtgcagaacattgggattaataagaacatgaaacactcccaagtggctcctcagcag
atgaggatgacattattacctggtgaggagcacgagctggagattgaggtgtttgagccg
gctcgtggtccactcgacctttacatccttatggacttctccaactccatgtctgatgat
ctggataaccttaagaggatgggggatgagctagctcagttagttgggactctctctgat
gattacacaattggattcggaaaatttgttgataaagttactgaaccacagacagacatg
agaccatcaaagttaaaggagccatgggcgaacagtgacccgccgttctcctttaagcat
gtcatcaatcttaccagtgacatcagcaacttcagacataatctgcagggagagagaata
tctggcaatctggatgctcctgaggggggattcgacgccatcctgcaggccgctgtgtgt
cagtctcagatcgggtggaggaagcacagcacccatctcctggtcttctccaccgaatct
gcatttcattatgaagccgacggaataaacgtgttggcaggaattttgcagcggaatgat
gaggcgtgtcacctggacagtaacggtctgtacactcatgccacgcggcaggattatcct
tccgtccccacactggtgcggctcctcgtccagaacaacatcatccccatcttcgccatc
accaaccactcgctttcatactacgagaaactgcttcattatttccccatcgctgaacta
ggagttctgacagatgattcctccaacatcctcaacattattaagaacgccttcgacagt
atccgttcaaaaattagcatccaggctgagaacaaaccaagagccatcggtgctcagatc
ctttcagcatctggagtggcatcggattacggaaacttccgcatccaaccgggagaaatt
ggtaaatttaaagtgcgcctgaacgctaagacgagtgtgagtgacaaacctgtgtgcagc
ctcaacactaacgaccgtgagggcatgatcagggtcaaacccaccacgtttagctctgct
cttcatatccaaacttctgttctctgtgaaacctgcgaatgtgaactgactccgactcgg
aaagcacagaggtgtaacggtaatggagacctggtgtgtggaacctgccgctgttacgat
aaatggttggggccgtactgtaactgctcgtctcaggtgtcctcagactcaggtgggtgt
gttgccccggggacgagcaagccgtgtaacgagagaggagactgtctgtgtgggacgtgt
ctctgctacaacccaaatcagtacgatgggcagttctgtcagtacgacagatcacagtgc
ggcagatcaggaggattcctatgtaacgatcgaggcaggtgttttatgggaaagtgtgtg
tgtgatagtggatggacaggaaacgcatgtgagtgtcctctcagtaatgcaacctgcctg
gacaataaagggggtttgtgtaatggtcatggtnngtgtaaatgtggacgttgtgagtgt
gaatactctggattagtgctgggaacaacatgtgaaccaaatttccaggcacaactgggg
nnatgtgagagcagaaggagttgtgtacagtgtcaagcctggaacaccggagagctaaaa
ggagacaagtgcaagagctgtccatttactatcnaaaaagtggatgaactgaaggacaga
gataaagtgatagagacatgtgagtatcgtgatgaagaagatgattgtacgtattactac
acagtgaactatcctcctaatcctactgataaagaacatgaggtggaagtgctcaagaaa
aaagaatgtcctcctggaggttttctctggttgattcctctcatcatgttcctgatgctg
ttgttgggtctcctgctgctgtgttgctggaaatactgtgcatgctgcaaggcgtgtttg
gccaggttttgtgcctgctgtccgtgttgtgcgatgggtcgaatggtgggatttaaagaa
gatcactacatgctgcgtcagtcgttgctgagctcagatcacctggacacacccatggtc
cggaccgggccgcccaagagcacagacgtggtgcgctggaaagtgaaagataacgtccac
cgtggaccgaaccatcctcagaaccagacccaacccaatcctaaagaaatcattgatttc
cctctgacactgcggctcctcagacagttttctgaagaactttcacacccagaagctcgt
aacactgaaactctcaaacagcaagtggaggaaaatctaaataacgtatacagacaaatt
cctggagctcagcgagtgcagaaaactcgattcaggacgcagagaaatgcagggaagagg
cagaacaacaccatcgtggacacggttctctcggctccacgctccagcttccacgacatc
ctgactctgacagataaacaggtgcaggctggaaatttcagtgagatgaaggtggtacct
ggattctacaccgtcgctacagacagagaggcgatgggggcggtggagctgcagngaggt
gtggagtctgtggatgttcgggttccactctttattaaagatgaggatgatgataagaaa
cagttgctggtggaagccgtcgacgttcctgtaggaatcgcaaccatcggaaaacgtcac
gtcaatatcacagtgattaaagaacacgctaagagcattctgacgttcctccagccctcg
tacacattctcccgtcaggacggcgtcgctaacatcccaattagccgtgacatcatcgaa
gatggtcgcactcaggtcacttactgcacccgtgacctcaccgctaaggacaagaaggac
tacctctcagtggatggagatctgatgtaccaggctggagaaactcagaagatggtccca
gtgaagctgttggagctcggggagggagattccctgatcgataaacagcccaaacagttt
gtgatggatctgagcaacccacgccagggtgctaaactcggcaaatacccacgaaccacc
atcaacatcgccgacaagccagatccaagcgtgatcatgttcaaaaacagcactcagacc
ttcaacatatcggacgcgctctacaccgttcctgtgatccgcactcaaggtctggaaaac
ccttccaccgttacctggcgcacaatttcctcccgcttcaacctgtccggcccactcaag
ttcgctccaggagagatggagaagaacatcgtgattgacactcgcacacagcaggttccc
tccaaaccagaaaacttccagctggagctgtacgacccgagttctaacagcctggtccga
gaccggaagaccacacaggtcaacatcattgatcctaaaggagatttctttataacgtct
ggaactaatcctattaaagcctcatctcctactgggcgaatccttcctccggccaacata
gaaactgttgctacaggccctaaaaagatccgccttaactggaaccctcagtctggagcc
aagggctataaggtgaagtactggatttatggagaccctgaagctgatgctcaggtggtg
gatgttaaaagcactcatgctgaattgacaaatctttacccgttctgcgattacgagatg
cgtgtgtgttcatataacgctcagggagacggagactacagtgacattgtacagtgccag
actcttgaggatgtcccaagtgaaccaggccgtctggcttttaatgtcattggcccgact
gtcactcagctgagctgggcagaaccagcagaacccaatggtgtgatcacagattatgaa
gttgtctacacccccatcaatgaggacagcaaacccactggacctgataagaaggtgaag
atcgacaacccaaagaaacgcatgctgcttattgagaacctacagccttcccagacgtac
cggtacaaagtgcgtgctagcaacaaggtgggatgggggccatacagagacgccaccatc
aatctggcaacccagccacacagacccatgtccattcccattattcctgacattccgatc
gtggatgcagaggccggtgacgattacgacagctttctcatgtacagtaatgaagttctt
cgttcacccaccgccagcagcagacctagcgtgtctgagttctctgaaggcaagcggtgg
aagcacgttaagcttgttggatcagacctggatctccgtactgtctcctggaaactgcct
gctgatgtcatccccacacgaagcacaggcactttggaaaaagatgatcttctggccact
gctcattcccagtcccctcatccaaccggcctttgcaagaaccctctacatggtgtccgt
tttgagaattctgttcaaggtggccattaccagaaccttctacaagaccagatcatgaat
ggaaaatgggatcaagggtttttgttcccaggtggtggaagtggttccctgtcacgtaac
atcagcaccacaaatacttacataaccagcaaaggagattctgtgcctcgcaaacatgac
atccataccgaggacgtgatcttgagaaaacgttcggaaaacaggaattattatgacagt
gatggaatcagagactccattgtgatgagtgacttgactggtggattctctgacattctg
agcggctctagcttcagccagactacaactaccagctacagcctgaactcccgtgttcac
aatcgctcagatgacatcaacgaagctctgcagaacctggacagggttctccaggatact
cggctgcagcgtggtgtcccggaaaccccgagcaggctggtgttttcagctctgggccct
acagcactgaaggtcagctggcaggagccccactgcgaaaagcccatatcaggatactgt
gttctctaccagctcctcagtggaggagaaatgaagcgcatggacatcactaaccctgcg
cagaactctgtggtagttcaggaccttctgcccaaccagtcgtacctgttcaaggtgaag
gctgagagtcaggagggttggggtccggagcgagagggagtcatcaccatcgagtctgca
gtggaccccaagagccctcttagccccgtgccaggttcttcatttactctaagcacaccg
agtgctccaggtcccctggtgttcaccgcactgagccccgagactctgcagctcagctgg
gacaaaccacggaaacccaatggcgagatcctgggctacgtggtcacctgtgaacagctg
catggtggaggagatcagcgctcgttccagctgagtgggaactcggctacgtccctgacc
gtctctgatctgactgaaaatgtcccgtataaatttaaagttcaggctcagaccacacag
ggcttcgggccggagagagagggaatcatcaccatcgagtctcaggatggttctatgggt
cagtacggtggtcagtctgtgatgaggagagaagtgtttaatttaccatcacagagctca
acacatacaacacacaccatgttcacggaacccttcaccaccccagaaggtattatgatg
tcgagcagacaggtcacacagcagatgagtggcagtgttacgcgtcaggtggagatggtg
cagagaggagtgacatccaccgtcaccaggaaacaatattacgaagcctga
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integrated database retrieval system
