Sinorhizobium meliloti RMO17: DU99_15190
Entry
DU99_15190 CDS
T03395
Definition
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
smer
Sinorhizobium meliloti RMO17
Pathway
smer03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
smer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DU99_15190
Enzymes [BR:
smer01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DU99_15190
DNA repair and recombination proteins [BR:
smer03400
]
Prokaryotic Type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DU99_15190
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Other DBs
NCBI-ProteinID:
AIM00691
UniProt:
A0A222H4E5
LinkDB
Position
3037307..3039904
AA seq
865 aa
MAARNEPLSEYNRRRDFTRTSEPKGAVARRSGDNRMRFLVQKHAATRLHYDFRLEWEGVL
KSWAVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPKGEYGGGTVMLWDTGWWEPEDDP
SKALKKGKLSFKLHGSRMKGGWALVRMRPREGEKRENWLLVKETDDVASDDGESLINENI
TSIVTGRTMEEIAEGRGEKRARVWHSNKSISANLKAGAIAENGNAGKRATRKASGKLPAF
KAPQLATLVTKVPAGDAWLNEAKFDGYRLVCAVGAGTVRCYTRNGLDWTEKFPAIAAALA
ELDCQSALIDGEVVALSEGGSTFSALQKALRTGASTRLYAFDLIELDGKDLSRKPLVERK
ERLEALLQTLGATSTVQFSEHVRGNGEHVLSAICKAGQEGIIAKEADAPYRSGRSRSWLK
VKCTKRQEFVIGGYTPSSKKGRAFASLLVGTFEGGKLIYRGGVGTGFSGKTMEDLAAAFA
KRKRDTSPFDSVPRERMRNSVWLEPDLVAEVDFAEFTADGHVRHGSFEGLREDKEARAVK
LETPKPAEAEPETAKSKSSARTRKTPPVQGDADVLGIRISHPDRVLFEGQGITKIDLARY
YAVVAERMLPFAADHPVSLVRCPQGGERHCFFQKHASDGFPEAIREVPITESSGDTENYM
YIHDAKGLVAAVQMGTLEFHIWGSSIDRLEKPDRLVFDLDPDPSVDFETVKAAALRLRDE
LAEIGLKTVPMVTGGKGVHVIVPLRPHAEWEEAKGFAKALARSIAERDPDNFVATMSKAK
RKGKIFIDWLRNDRGATAIAPYSTRARSGGPVATPVGWDELQGLEAANGFQIPDIIERIE
AGTDPWREIGKISQSLTKKILNSVE
NT seq
2598 nt
+upstream
nt +downstream
nt
atggccgctcgcaatgaaccgctttccgaatataaccggcgccgcgatttcacgcggacg
agcgaacccaagggagcggtcgctcggcgcagcggggacaacaggatgcggttcctggtt
cagaagcacgctgcgacccgcctgcattacgacttccgcctggaatgggagggcgtgctg
aagagctgggcggtcacacgcggcccgagcctcaaccccgaagacaagcgcctggccgtg
cgtaccgaagaccacccgcttgcctatggcgacttcgaaggaacgataccgaagggagag
tatggcggcggtaccgtgatgctctgggataccggctggtgggagccggaggatgacccg
tcgaaagccctgaagaagggcaagctctccttcaagctgcatggcagccgaatgaagggc
ggctgggcgctggtgcgcatgcggccacgcgaaggcgaaaagcgcgagaactggctgctc
gtcaaggaaacggacgatgtcgcctccgatgacggcgagagcctgatcaacgagaacatc
accagcatcgttaccggccggacgatggaggagatcgccgaaggcaggggcgagaagcgg
gcgcgggtctggcattccaacaaaagcatctcggccaatctcaaggccggcgcgatcgcc
gaaaacggcaatgcaggcaagcgcgcgacgcgaaaagcctccggcaagctgcccgccttc
aaggcaccgcagctggcgactctggtgaccaaggtgcccgccggcgacgcatggctgaac
gaagccaagttcgacggctaccgtcttgtctgcgccgtcggtgccggcaccgtgcgctgc
tacacgcgcaacggcctcgactggaccgagaagttcccggcaattgccgccgcccttgcc
gaactcgactgccagtccgctctgatcgatggcgaagtggtggcgctttcggaaggcgga
tcgaccttctcggccctgcagaaggcgcttagaacgggggccagcacacggctttacgct
ttcgatctcatcgagctcgacggcaaggatctgagccggaagccgctcgtggaacgcaag
gaacggctcgaagcgctgctccaaacgctcggcgccacctctaccgtacaattcagcgag
catgtccgcggcaatggcgagcacgtgctttccgcgatatgcaaggccggccaggagggt
ataatcgccaaggaggccgatgccccctatcgcagcgggcgcagccgaagctggctcaag
gtgaaatgcacgaagcgccaggagttcgtgatcggtggctataccccgtcttcaaagaag
gggcgtgccttcgcctcgctgctcgtcgggaccttcgaaggcgggaagctgatctaccgt
ggcggcgtcggcaccggtttcagcggaaagacaatggaggacctcgccgcggccttcgca
aagcgcaagcgcgatacgtcgcccttcgacagcgtgccgcgagagagaatgcgaaattcg
gtatggcttgagccggacctggtggcggaggtggatttcgccgaattcacggccgacgga
catgtccgtcacggttcattcgagggattgcgcgaggacaaggaggccagggccgtgaaa
ctggagacaccgaagccggcagaagcggagccggagaccgccaagagcaaatcttccgcc
aggacgcgcaagacgccgcctgtgcagggagacgccgatgtcctcggcatccgcatctcc
catccggaccgggtgctcttcgaaggccagggcatcaccaagatcgatctcgcccgctat
tacgccgttgtcgccgagaggatgctcccctttgccgccgatcaccccgtttcgctggtg
cgctgcccgcagggcggcgagcggcactgtttcttccagaaacacgcaagcgacggcttt
cccgaggcgatccgggaagtgccgattaccgagtcatcgggcgacaccgagaactatatg
tacatccacgatgccaagggcctcgtcgccgccgtgcagatggggacgctcgagtttcac
atctggggttcaagcatcgaccggctggagaaacccgaccgtctggtcttcgatctcgac
cccgatccgagcgtcgacttcgagacagtcaaggcggcagccctcaggctccgcgacgaa
ctcgccgagatcggcctgaaaacagtgcccatggtgaccggcggcaagggcgtccacgtc
atcgttccgctccgcccccatgccgaatgggaggaggccaaaggcttcgcgaaagcgctc
gcgcgatctatcgccgagcgcgatccggacaatttcgtcgccaccatgtcgaaggcgaag
cgcaagggaaagattttcatagactggctgagaaacgatcgcggcgccacggcgatcgcg
ccctattccacccgcgcgcgctccggcggaccggtcgccacaccggtcggctgggacgaa
ctccaaggcctcgaagccgccaacgggtttcagattccggacattatcgagcggatcgaa
gccgggaccgatccgtggcgggagatcggcaagatcagtcagtcgctgacgaagaagata
ttgaactcggtcgaatga
DBGET
integrated database retrieval system
