Shewanella mesophila: K0I73_09650
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Entry
K0I73_09650 CDS
T09171
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
smes
Shewanella mesophila
Pathway
smes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I73_09650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smes03019
]
K0I73_09650
03400 DNA repair and recombination proteins [BR:
smes03400
]
K0I73_09650
Enzymes [BR:
smes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I73_09650
Messenger RNA biogenesis [BR:
smes03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I73_09650
DNA repair and recombination proteins [BR:
smes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K0I73_09650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
DDE_3
Motif
Other DBs
NCBI-ProteinID:
QYJ84549
LinkDB
All DBs
Position
complement(2197376..2199313)
Genome browser
AA seq
645 aa
AA seq
DB search
MQALLQQYFGFDHFRAGQEQVVNSIISGRSAAAIFPTGSGKSLCYQLPALVLPHLTIVVS
PLLALIQDQLAFLQAKGIPAASIDSTLSREQSQAVMSGVRQGKIKILMISVERFNNERFR
AFISSIPISLLVVDEAHCISEWGHNFRPDYLKLPQYVQELSIPQVLLLTATATSKVIQDM
GAKFTIAPADIAVTGFYRSNLNLHVQGVKAQDKLATLVDWLGKRDGHHGIIYVTLQQSAE
EVANALNRQNINALAYHAGMESDKRQQVQKAFMSGRCPIIVATIAFGMGVDKQDIRFVVH
FDLPKSIENYAQEIGRAGRDGQVAECLVLANTDNLNVLQNFVYGDTPDRRGIAYVLNEIL
TASQTSNQWEVVLNSLSTQSNVRLLSLKTLLVYLEMLNVIRPSFSYYAEYRFKLLCSESE
LVTLFTGERQLFVQALLDSSQKAKIWYSIDFESLNSAYPSDRSRVISAINYFEEKGLIEL
QTKQMTEVYQLLVLNENIDETVDMLAKKFLIKEQSEIARIQAMVDLLASDTCLTRRLSEY
FSDPQVPEHCGHCSVCIEGGAILPSSGTLTPLSLLDFSSLCHDLIVQLTGSQLADANMLA
RALCGLTTPLFTQLKMRRVRSFAALESYPFAEVRHWCEHHFDASL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcacttctccaacaatatttcggttttgatcactttagagcgggtcaggaacaa
gtggttaacagcataatatctggccgtagcgcagccgctatctttccgacgggttcagga
aaatcgctttgttatcaattgcccgcattggtgttacctcatctaactattgtggtttcg
ccattacttgcgcttatccaagaccaattggcatttttacaggcaaaaggcatcccggca
gcgagcatagattcgaccctgagccgtgagcagagtcaggctgtgatgagtggtgtaagg
caaggtaagatcaaaattctgatgatctcggttgagcgttttaacaatgagcgctttaga
gcatttatttcaagtatcccgatctcattgcttgtggttgacgaagcacactgtatctca
gagtggggacataactttcgtcccgattacctcaagctacctcaatatgtacaagagttg
tcaattcctcaagtgcttttgttgacggcaactgcgacctctaaagttatccaagacatg
ggcgccaagtttactattgcgccagcagatattgcggtgacaggattttaccgatcaaat
cttaatcttcatgtccaaggggttaaagcgcaagataagttagctacattggttgattgg
ctagggaagcgagacgggcaccatggcatcatctatgtgacattacagcaaagcgcagag
gaggttgctaatgcgctaaacagacagaacatcaatgcgttagcttatcacgccgggatg
gaaagtgataagcgtcagcaggttcaaaaagcattcatgtcggggcgttgtcctattatt
gtagctacaatcgcttttgggatgggggtcgataagcaagacattagatttgttgttcac
tttgatctgcctaaatcgatcgaaaattacgcccaggaaattggtcgagctggacgagat
ggtcaagtggcagaatgtttagtgctcgccaataccgataatctcaatgtgttacagaac
tttgtttatggtgatacaccagatcgacgaggtatagcctatgtgctcaatgaaattttg
acagcaagtcaaacttcaaatcaatgggaagtggtattaaacagcttatcgacccaatca
aatgtgcgtttactgagtttaaaaaccttgctcgtgtatttagagatgctcaatgttatt
agaccctcgtttagctattacgccgaataccgctttaagttgctgtgtagcgaatcagaa
ttggtgaccctgtttacgggtgagcggcagctatttgttcaggcgttactcgatagttct
caaaaagcaaaaatctggtacagcatagactttgaatcacttaacagtgcttacccaagc
gatcgaagccgggttatttctgcgattaattattttgaagagaaagggttgattgagctg
caaacaaagcagatgactgaggtataccagctgttagtattaaacgaaaatattgatgaa
actgttgatatgctggcgaagaagttcctgattaaagagcaaagtgagatagccagaatt
caggctatggtcgatctgttagcaagtgatacttgtcttactaggcgtttatccgagtat
ttttcagatcctcaagtgcctgaacattgcggtcattgctctgtatgtattgaaggcggc
gcgatactgccaagtagtggcacacttacaccattaagcctgctcgacttctcatcctta
tgtcatgatttaattgttcagttaactgggtctcaactggccgatgcgaacatgttggcg
agagcgctttgcggtttaaccacgccattatttactcaattgaaaatgcgccgtgttcgc
tcatttgcagcccttgaatcctatccgtttgcagaggttagacactggtgtgaacaccat
tttgatgcgagtttgtaa
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