Breviolum minutum: v1.2.028990.t1
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Entry
v1.2.028990.t1 CDS
T04349
Symbol
symbB.v1.2.028990.t1
Name
(OIST) -
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
smin
Breviolum minutum
Pathway
smin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
v1.2.028990.t1 (symbB.v1.2.028990.t1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
smin03019
]
v1.2.028990.t1 (symbB.v1.2.028990.t1)
Enzymes [BR:
smin01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
v1.2.028990.t1 (symbB.v1.2.028990.t1)
Messenger RNA biogenesis [BR:
smin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
v1.2.028990.t1 (symbB.v1.2.028990.t1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
v1.2.028990.t1 (symbB.v1.2.028990.t1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
LinkDB
All DBs
AA seq
457 aa
AA seq
DB search
MAPGRSPERGSSSSRSTSPEEDQPLVTVVRAELVRGHRPVVVSEACRFRLPGPNVKYRWL
RGPVVKPCFYHPHKMSQIKDVGRTHLCYCSKECFLKGYNEIPQTQWGTKDDVEKQELIAE
WVEVANTRSYCPSKEDINRPLRLEITPLAKGGGKSTIGGMTITTGTVIPTPQEARCRRTL
TNKNESGLKWLNKQFKVMNWNVLADLYANESVYPYCEKWALSWTWRKHLIMKELKSMAVD
VITLQEVQKDAYDEWFRPQLQDAGYEGVFQHKKRDPIFHRGKYTAEGCATFYKTTRFRRV
EKHVIDYDRETSGEIRGAGLEFENDRCLQRLSKGNIALVVILEDLLIKNPNSGQAGETGG
HCLVVVNTHILCDPSSSDVKLWQSYLLVNSLRKMGWDQWPLLLAGDFNSTPESAVYEYLR
NAYVSDKHEASDKVWSLQLCENSAEFFRIFAMIHQDF
NT seq
1981 nt
NT seq
+upstream
nt +downstream
nt
caactacacaaaaaaaaatcagcttgctgcagccattgcttcagcccggaggacagaccc
catggcacctggacggagcccagaacgaggttcaagcagcagcagatctacatcccccga
agaggatcagcctcttgttacggttgtccgtgctgagcttgttcgcggacatcgcccagt
ggtggtgtctgaggcttgccgtttccgactcccaggtccgaacgtcaaataccgatggct
ccggggaccagtagtgaagccttgtttctaccatccccacaagatgtcccagatcaagga
tgtggggaggacccacctttgctactgctcgaaggaatgctttctgaagggatacaatga
aatcccgcagacgcagtggggtacgaaggatgatgtcgaaaagcaggaattgatcgctga
gtgggttgaagtggccaacacgagatcttactgccctagcaaggaggatattaatcgccc
ccttcgtttggagatcacgccgttggccaagggtggtggcaaatcaaccattggtggtat
gaccattacaactgggacagtcatcccgacacctcaagaggcgcggtgccgcaggacgct
gaccaacaagaatgaaagcggcttgaagtggcttaacaaacagttcaaagtcatgaactg
gaatgtcttggctgatctctacgcaaacgaatctgtgtatccgtattgtgagaagtgggc
actgtcttggacatggcggaagcatttgatcatgaaggagctgaagtccatggcagttga
tgtcatcactcttcaagaggttcagaaggatgcgtacgacgagtggttcaggccacagct
ccaagatgcaggctacgaaggtgtctttcagcacaagaagcgggatcccatcttccaccg
cgggaagtacacggcagaaggctgtgctactttctacaagaccacgcggttccgcagggt
tgagaagcatgttatcgactatgaccgtgagacttccggtgagattcgaggtgctggttt
ggaattcgagaatgatcgctgtcttcaacggctctccaaaggcaacattgctctggtcgt
catcttggaagatctgctgatcaagaatcccaacagtggccaggctggcgagactggcgg
tcattgcctggtagtggtcaacacccatattctttgtgatccaagctcttcagatgtgaa
gttgtggcagtcctacttgctggtgaactcgctccgcaaaatgggctgggatcaatggcc
actgcttcttgctggtgacttcaattcgacacctgagtcagcggtctacgaatatctcag
gaacgcatatgtctctgacaaacatgaggccagtgataaagtttggtctttgcagctctg
tgaaaattctgcagaattcttcaggatcttcgccatgatccatcaggacttctgagcagg
tttcgaatccacatgcgccacgacctggaattgatcactgcctatgagaaatgcactggc
tcagaggccagattcaccaactacactgaggacttcaaaggcacgctggattacatctgg
ttctccccacaggctttgaacgtggtcgcggtaacagctgtggacgatgaaggagaattg
aagaaggaacatgccctaccttcaagcaatcgaccgtcagatcacgtgtcacttgtggct
acgtttatgttcaaagaagcgcacgagcataaggcccaagcgcggcttatgagcagcacc
cacacgtaccaccacatggctggtctcaccggaccaggaggaggatgggatcaatactgc
atgagttagctccacagcaccaaagctggagagcgaatcgatgaagaagtgcaaactagt
ggctaatgaaagttcagtgcccccgaggactgattggcggcttttgagccacaaaaaaaa
tactgtcttctagtggctccagactgccccggtgatacgaatcgatggcagaattggaaa
g
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integrated database retrieval system