Salegentibacter mishustinae: LDL76_09260
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Entry
LDL76_09260 CDS
T07820
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
smis
Salegentibacter mishustinae
Pathway
smis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LDL76_09260 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smis03021
]
LDL76_09260 (rho)
03019 Messenger RNA biogenesis [BR:
smis03019
]
LDL76_09260 (rho)
Transcription machinery [BR:
smis03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LDL76_09260 (rho)
Messenger RNA biogenesis [BR:
smis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LDL76_09260 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
UBZ05561
LinkDB
All DBs
Position
complement(2019914..2021566)
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AA seq
550 aa
AA seq
DB search
MFEISELKAKKLPELQDIAKSLNVPKFRTLKKLDLVYQILDYQAANPKKAKEALTDDTKK
EESPKSEATAKTSEKPQTKKGGKIGSNKKPPRAAATAETKDSRPAKKESNSPKKEEASSK
SGENKKPEQKQRDTRDDNSSKNQKNNPREHKKDSRNKNNGGRDSGNRDSRNRYREPDYEF
DAIIESEGVLDIMQDNYGFLRSSDYNYLTSPDDIYVSQSQIRLFGLKTGDTVLGQIRPPK
EGEKYFPLIKINKINGLDPQVVRDRVSFEHLTPLFPKEKFNIAEKQSSLSTRIMDLFSPI
GKGQRGMIVSQPKTGKTMLLKDIANAIAANHPEVYQIVLLIDERPEEVTDMQRNVRGEVV
ASTFDKEAHEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLSGG
VDANALHKPKRFFGAARNIENGGSLSIIATALTDTGSKMDEVIFEEFKGTGNMELQLDRK
IANRRIFPAIDLTSSSTRRDDLLLDENTIQRMWVLRKYLADMNPIEAMEFINDRIKQTKN
NEEFLISMNG
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcagaattaaaagctaaaaagcttcctgagttgcaggatatcgctaaa
tctttaaatgtcccaaaattcaggaccttaaaaaaattagatctggtatatcaaatcctg
gactatcaggctgccaaccccaaaaaggcaaaagaagcacttacagacgacacaaaaaag
gaggagtctccaaaaagtgaagcaactgctaaaacttcagaaaaaccacagactaaaaaa
ggtgggaaaataggaagtaacaaaaaaccaccaagggctgctgcaacggcggagaccaaa
gattcgcgcccggcaaaaaaggaaagtaattctcctaaaaaagaagaagcatcttcaaag
tcaggggaaaataaaaagccggagcaaaagcaaagggacacaagagatgataattcttct
aaaaatcagaagaacaatcctcgcgagcacaaaaaagattcgcgcaataaaaataacgga
ggccgcgatagcggaaaccgtgatagccgtaatcgctaccgcgaaccagattacgagttt
gatgcgattattgaaagtgaaggtgtactggacattatgcaggacaactacggtttccta
agatcttcagattacaattaccttacttctccagatgatatttatgtttcccagtcgcaa
attcgtttattcggtttaaaaaccggagacaccgtattagggcaaataagaccaccaaaa
gaaggcgagaaatatttcccattaatcaagatcaataaaattaacggattagacccacag
gtagtgagagaccgtgtttcttttgagcacttaactccacttttcccaaaggaaaaattc
aatatagccgaaaaacaaagcagtttatctacccgtatcatggatctcttttcccctatt
ggaaaaggccagcgtggtatgattgtttcccagcctaaaactggtaaaacaatgttgctt
aaagatattgccaacgcaattgcagcaaaccatcccgaggtttatcaaatagttctcctt
attgatgaacgtcctgaagaggttaccgatatgcaacgtaatgtacgcggggaagtagta
gcttctacttttgataaagaagcacacgaacacgtacgagttgcgaatatcgttttagaa
aaagcaaagcgtttggtagaatgtggtcacgatgttgtgattcttttagattctattact
cgtttggctcgtgcatacaacaccgtacaacctgcaagtggtaaagtattaagtggtggt
gtagacgctaatgcactacacaaaccaaaacgtttctttggtgcagctcgtaatatcgaa
aatggaggttctttatcaattattgctaccgctcttaccgataccggttctaaaatggac
gaagtgatcttcgaagaatttaaaggaacaggaaatatggagctgcaattggatagaaaa
attgctaaccgtagaattttccctgcgattgatcttacttcttcaagtacacgtcgtgac
gacttattacttgatgaaaacacgatacaaagaatgtgggtgttgcgtaaatatcttgcc
gatatgaatcctatagaagctatggaatttattaacgacaggattaaacaaaccaaaaat
aatgaagagtttttaatctctatgaacgggtaa
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