Selaginella moellendorffii: SELMODRAFT_104482
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Entry
SELMODRAFT_104482 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
smo
Selaginella moellendorffii
Pathway
smo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SELMODRAFT_104482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_104482
Enzymes [BR:
smo01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
SELMODRAFT_104482
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
SELMODRAFT_104482
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
SELMODRAFT_104482
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
SELMODRAFT_104482
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
SELMODRAFT_104482
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DcpS_C
zf-C2HE
AAA_33
Macro
HIT
KTI12
AAA_22
AAA_16
AAA_17
Motif
Other DBs
NCBI-GeneID:
9646016
NCBI-ProteinID:
XP_002976053
JGI:
104482
UniProt:
D8RXR4
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MTHEKFCDGFLVFSSLAPAIIEGSASCEPNLVVVVLVGVPGSGKSRFCSSVIENASQTWT
RICQDIIANGKRGTKAQCIKQATIALNSSSSVFIDRTNLNREQRLEFIEFAKKRGVEAHA
VVLNLPVGTCITRAMNRTSHEGGLEGKKVGAVIQRMAHGVELPALEEGFSRITVCRTDGD
ADECIVAYRSLSSSSKLPTGVFDRNSSSTTKGSLEQFLNKPGGGQKKAGQASSSAASTKK
GVESAAPELKDGDGSMPQASEESCATLAFPSISTADFRFDHEKAANIIVETVSEFFSRAE
SSGLRLVLVDIDQGSDMLSRVRSKAESAGLDSRKFLVTHGDITKLHSTGGPRCSVIANAA
NWRLKGGGGGVNLAIYRAAGDDFEEATKKYAKTLDPGKVVAVPLPASSPLRTKEGVTHVI
HVLGPNMNPQRPNCIADDYSQGCRLLRQCYAALFSTFASIAKGQASKAKVTASPASNSSS
PGSSKKGKAEVGKVTGEEGNPASGTGTLKAAVEEKAATKKPVNWPAWAQALHDVAFHPEK
HSNVVLEVTDDCVVLPDLYAKAKKHLLVVSRKAGLDSIADVTNEHLPLLREMHAVGERWA
KKLVEEDNTLVFRLGYHSVPSMRQVHLHVISQDFNSPGLKNKKHWNSFTTSFFRDSRDVI
AELESRGKLEECTEEMEKRLLDSELRCHRCRCVQPNIPRLKAHVCSCSKPLPLQSLIS
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacgagaaattttgtgacggttttcttgttttttctagtctagccccggccatc
atcgagggcagcgcttcgtgcgagccaaatctggtggtagtggtgctggtcggggttcca
gggagtggaaaaagccggttttgttccagcgtcatcgagaatgcttcacaaacttggacc
aggatttgtcaggatatcatcgccaatgggaagcgagggacgaaagctcagtgtatcaaa
caagccaccatcgccctcaattcctccagcagcgtcttcatcgatcgaaccaatctcaac
cgcgagcagcggctggaattcatcgagtttgcgaagaaacgcggtgtggaggcccatgcg
gtggtgctcaacttaccggttgggacgtgtatcactcgggccatgaatcggacttctcac
gaggggggactggaaggaaagaaggtcggggctgttattcaaaggatggctcacggtgtg
gagcttccagcgctggaggaaggattcagcagaatcacggtgtgtagaacagatggtgac
gccgacgaatgtatcgtggcgtacagatctttgagctcgtcatcaaagctgccaacggga
gtttttgatcgaaattccagcagcacgacgaagggatcgctggaacagtttctaaacaag
ccgggtggtggtcagaaaaaggcgggccaagcaagcagcagtgctgcgagcacgaagaaa
ggagtggaaagcgctgctccagaacttaaagatggtgatggatcgatgccgcaagcttct
gaagaaagctgcgcaactcttgcgtttccgtcaatctctacagcagatttccgctttgat
cacgagaaagctgcaaatatcattgttgagacagtgtcagagttcttcagccgtgcggag
agcagtggtttgaggctggtgctggtggatatagaccaagggtcggacatgctctcccgt
gttcgaagcaaggccgagtccgccggcttggacagccggaagttcttagtgactcatgga
gacatcacaaagctccattccaccggaggccctcgttgctcagtcattgctaacgccgca
aactggcgcctcaagggtggtggtggcggcgtgaatcttgcaatttacagagctgctggt
gacgattttgaggaagcaacgaaaaaatatgcgaaaactttggatccaggaaaggtggtg
gccgttccactgcctgcctcgtctcctctacgcacaaaggaaggggtaactcacgtcatt
cacgtccttgggcccaacatgaatccacagaggccaaactgcatcgccgacgactactcc
cagggctgtaggctgctgcgacaatgttacgctgctctcttctcgactttcgcgtccatt
gcaaaaggccaagcttccaaagccaaagtaactgcgtctcctgccagcaacagcagctcc
cctggttcttcgaagaagggaaaggctgaggtgggaaaagttacaggggaagaaggcaac
cccgcgagcggaactggaactctaaaggcagcggtggaagaaaaagccgctaccaagaag
ccagtgaactggcctgcgtgggctcaagctctgcacgacgtagcgtttcatcctgagaag
cacagcaatgtggtcctggaggtgaccgacgattgtgttgttctgcctgatctctacgca
aaggcaaagaagcatcttctagtggtgtcgcgaaaggctggattggactccatagccgac
gttactaacgagcaccttccgctcctccgcgagatgcatgctgttggcgagcgctgggct
aagaaactcgtggaagaagacaacactctcgttttccggcttggctaccactcggtacca
tcaatgcggcaggtccatcttcacgtcatcagccaggacttcaactccccggggctcaag
aacaagaagcattggaactcgttcacgacgagcttcttccgggactcgcgggacgtgatc
gcggagctggagagccgcgggaagctcgaggagtgcacagaggagatggaaaagaggctg
ctggattccgagctgcgctgccatcgctgccgttgcgtccagccaaacattccgcgctta
aaggcccatgtttgctcgtgctccaagccattgcctctccagtctctcatctcttag
DBGET
integrated database retrieval system