Selaginella moellendorffii: SELMODRAFT_114224
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Entry
SELMODRAFT_114224 CDS
T01496
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
smo
Selaginella moellendorffii
Pathway
smo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
smo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SELMODRAFT_114224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smo03400
]
SELMODRAFT_114224
DNA repair and recombination proteins [BR:
smo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
SELMODRAFT_114224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_29
Motif
Other DBs
NCBI-GeneID:
9647440
NCBI-ProteinID:
XP_002981472
JGI:
114224
UniProt:
D8SDP1
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
LSGEALERFGGRISRKFSFLGKNRKDSSGRRHDWPNFDSRTLFLPAEFVKGLTGGQRQWW
EFKAKHMDKVLLFKMGKFYEMFEMDAHVGAQDLDLQYMKGEQPHCGFPEKNYFENVEKLV
RKGHRVLVVEQTETPEQLEERKRKTGSKDKVVRREICAIITKGTMVDSGMISDNAEPSFL
AAVTEKADNYGGSLVGLCVVDASRALFMLGQVEDDSARTKLRSILTELRPVELVLPLGLL
TDATQKALREQTRKPLISQLVPSKEFWDAEQTTKEIRTSYGASDVMPTVLQKILELGVSS
EPVLSAFGGCICYLRQSLLDGQLLQLGRFELLPGSDLSFEHSAAIPEAAEAHMVLDSAAL
DNLEILENSSNCGVAGTLLCLLDHCITPFGRRLLKQWIVRPLCNIESIVQRQNAVVDMQG
VAENAVSEFRRELSGIPDLERLLARLSANSGENGRHSQKVVLYEDAAKKQIKELVAALRG
FQKLVKAVSCFGNCLPQLKSARLRSLLTFGKGFPDLKPLLQYFEDSFDWSESEANGRVTG
GDHSNLSASDPREKLESYLKSQQKFFKNPEISYVTVGKDTYLLEIPEELHTKVPSDYELR
SSRKGFCRYWTPRVKELLQELSLCENEKEAALRGILQTLTKRFCDDHDHWLSAIRAVSEL
DALMSISSARLHMDGMTCLPTFVPASQLAKPVFRAKALRHPIVAVSTAASTPFVPNDVVL
GGGSNPEVMLLTGPNMGGKSTLLRQVCLGMILAQIGSEVPAESLELSLTDRLFVRMGAKD
QIMTGQSTFLIELLETAVMLRCATQNSFVALDELGRGTATSDGQAIAHAVLHYLAHNVQC
RGMFSSHYHKLASDFANDPSVSLCHMACKVGGGNNELEAVTFLYKLTSGSCPKSYGVNVA
RIAGKPKFPSHAHVSRSFHAGMPESVLRRAALQSAKLEKEVESHCHEADVIKTILDASVD
SAEQLRTAWEKAKLI
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
ctgagtggtgaagcacttgaacgttttggcggtcgaatctcaagaaaattcagctttctt
ggcaagaaccgcaaggattcttcaggaaggcgccatgactggccaaattttgattctcga
acactttttttgccggccgagtttgtgaaagggctcacaggaggccagaggcaatggtgg
gaattcaaggccaaacacatggataaagttcttctttttaagatggggaagttctacgaa
atgtttgagatggatgcacatgttggagctcaagaccttgatctgcagtacatgaagggt
gagcagccgcattgtggcttcccggaaaagaattattttgagaatgtagagaagctagtt
cgaaaggggcatcgagtgttggtggtggagcaaacggagacaccagaacagcttgaagaa
cgcaagagaaaaacgggcagcaaagacaaggttgtaagacgtgaaatatgtgcgatcata
actaagggaaccatggtggactctggtatgattagtgacaatgcggagccctccttcctt
gctgcagtaacagagaaggcggacaattatggaggttctttggtcggactttgcgtggta
gatgcctccagggctttatttatgctcggtcaggtcgaggatgactccgcaaggacgaaa
ctcagatctatattgacagaactgaggcctgtcgaactagtcttgccgcttggcttgctg
acggacgctactcaaaaggccttacgcgaacaaacaagaaaaccattgatcagtcaactt
gtaccttcaaaagagttctgggacgctgaacagacaaccaaagagattcgcaccagttat
ggagcttcagacgtgatgcctaccgttcttcaaaaaattctcgagcttggtgtttcgtca
gaaccagttttatctgcttttgggggctgcatttgttacttgaggcaatcgcttcttgat
ggtcagctcctccagcttgggaggttcgagttgcttccaggatcggacctgtcattcgaa
cattcagccgctattcctgaagccgcagaagctcacatggtacttgacagtgctgctttg
gataacttggaaatattggaaaactcttccaattgtggagtggcagggactcttttgtgt
ttactcgaccactgcataacaccattcggaagacgtctattgaagcagtggattgtcagg
cctctttgcaatattgaatccattgtgcaacggcaaaatgccgtcgtagatatgcagggt
gtggcggaaaatgcagtttcagaatttcgacgggagctctctggtattccggaccttgaa
agacttctagctcgactcagtgcaaacagtggggaaaatgggaggcattcgcagaaggtt
gtgctgtatgaagatgctgcaaagaagcagatcaaggaactcgttgcggcacttcggggc
tttcagaaacttgtcaaagctgtatcttgtttcggcaattgtctgccgcagctcaaatca
gctcgcctgcggtctttattgacctttgggaaaggatttcctgatttgaagcctcttctg
cagtattttgaggattcctttgactggtcggagtcagaagcaaatggtcgagtaaccggt
ggtgatcatagcaacttatcggcatctgatcccagagaaaaactcgagagctacctgaag
agccagcaaaagtttttcaaaaatccagagatttcttacgtgactgttgggaaggatact
tacctgcttgagatacccgaagagctgcatactaaagtgccttcagattacgaacttcgc
tcgtctagaaagggtttctgtcgatactggacaccaagggtgaaagagctgttgcaagag
cttagcctttgtgaaaacgagaaggaagctgctctgagaggcatactccaaactcttact
aagcgcttttgtgacgatcacgatcactggctctctgctattcgagctgtttctgaattg
gatgctcttatgagcatatcgtctgcccggttgcacatggatggaatgacgtgcttgcca
acgtttgtcccagcaagtcaacttgcaaagccggtttttagagccaaagccttacgacat
cctatagtggctgttagtactgctgcaagcactccttttgttccgaacgatgttgttctc
ggtggcggaagcaatccagaggttatgcttttgacagggcccaatatgggtggcaagtcg
actttgcttcgtcaagtatgtctgggaatgatactcgcacagattggttcagaggttcca
gctgagtcgctcgagctttcccttacggatagattattcgttcgtatgggagccaaggat
caaatcatgacaggtcaaagcacattcttgattgaactactggaaaccgctgttatgctg
cgctgtgcaactcaaaactcgtttgtggctctggacgagcttggacgtggaacagcaacc
tcagacggccaagctatagcgcacgccgtgctccattatctagcacacaacgtccaatgt
cggggaatgttttcttctcactaccacaaacttgcaagcgattttgcgaatgacccttcc
gtgtctttgtgccatatggcatgcaaggttggaggtggaaataacgagctggaagcagta
acattcctctacaaactcacttctggctcttgcccgaagagttatggcgtcaacgtcgca
cgaatagcaggcaagccaaagttcccgtctcatgcacatgttagtcgctctttccatgca
ggaatgccagagagcgtgttgcgcagagccgcactacagtctgccaaactcgagaaagaa
gtggaatctcactgtcacgaagcggacgtcatcaaaaccatcctcgatgcctctgttgac
agtgcggaacaacttcgcacggcttgggagaaggcaaaacttatataa
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