KEGG   Selaginella moellendorffii: SELMODRAFT_97073Help
Entry
SELMODRAFT_97073  CDS       T01496                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
smo  Selaginella moellendorffii
Pathway
smo03030  DNA replication
smo03410  Base excision repair
smo03420  Nucleotide excision repair
smo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:smo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SELMODRAFT_97073
   03410 Base excision repair
    SELMODRAFT_97073
   03420 Nucleotide excision repair
    SELMODRAFT_97073
   03430 Mismatch repair
    SELMODRAFT_97073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:smo03032]
    SELMODRAFT_97073
   03400 DNA repair and recombination proteins [BR:smo03400]
    SELMODRAFT_97073
Enzymes [BR:smo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SELMODRAFT_97073
    6.5.1.6  DNA ligase (ATP or NAD+)
     SELMODRAFT_97073
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SELMODRAFT_97073
DNA replication proteins [BR:smo03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SELMODRAFT_97073
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SELMODRAFT_97073
DNA repair and recombination proteins [BR:smo03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SELMODRAFT_97073
   NER (nucleotide excision repair)
    Other NER factors
     SELMODRAFT_97073
   MMR (mismatch exicision repair)
    Other MMR factors
     SELMODRAFT_97073
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 9651056
NCBI-ProteinID: XP_002972446
JGI: 97073
UniProt: D8RMH0
LinkDB All DBs
Position
Unknown
AA seq 638 aa AA seqDB search
MDALRSKPFDPRKAAFWEDKEPVPFLFFARVMDMISNESGRLVMTEILCNAFRTVIATTP
QDLLPVVYLSANKIAPAHDGIELGIGDASIIKALADAFGRKEDQIKSQMKALGDLGLVAK
ASRSTQRLMFKHPPLTCAKVLETFRSIAKESGKDSQEKKRSRMKSLLVAATDCEPQYLVR
LLQAKLRVGLAEATVLVALAQAAVYAEQPPVSSSMLPGRLEEAAEIMKQTYSVLPIFEKI
VPILLTDGISKLPEVCAFTVGVPVGPMLAKPTKGVSEILDKFQNTVFTCEYKYDGERAQI
HYFEDGRVEVYSRNAERNTGKFPDVTSSISGYMKPEVSSFVMDCEIVAYDKESNKILPFQ
VLSTRARKGVILSDIKVKVLIFAFDLLYLNGRVLLQEQLVRRRELLYQSFIEKPGEFQFA
TATNSKELEEIQSFLDDAINHSCEGLIVKTLEKDATYEPAKRSNNWLKLKKDYMDTIGDS
LDLVPIGAFHGRGKRVGVYGAFLLACYDPDKEEYQSICKIGTGFTEAVLEERSNTLRKHV
IDTPRPYYRYGETLAVDVWFDPVEVWEVKAADLSISPVHKAAYGELETSKGISLRFPRLL
RMREDKKPEQATSSDQVVDLYRAQKINHRSTKNEDDSS
NT seq 1917 nt NT seq  +upstreamnt  +downstreamnt
atggacgcgctgcgttccaagccttttgatccaaggaaagcagcgttctgggaagacaaa
gagccagtcccattcctcttcttcgcaagagtgatggacatgatctcgaacgagagtggg
aggcttgtcatgacagagattctttgcaacgcttttcggacagtcatagcaacgacgccg
caggacttgcttccggtggtttacctctccgcaaataaaatcgctcctgctcacgatggt
atcgagcttggaattggtgacgcttcgatcatcaaagctcttgctgatgcctttgggagg
aaggaggaccagataaagagccagatgaaggctcttggagacttgggacttgtggctaag
gccagtcgctcaacgcaaagactgatgttcaaacatcctcctttaacctgcgcaaaagta
ctggaaaccttccgctccatagccaaggaaagtggcaaggatagccaggaaaagaaaaga
tctagaatgaagtcgcttcttgttgctgcgactgattgtgaacctcaatacctcgtgcgg
ttgcttcaggcaaagcttcgtgttggacttgcagaggccaccgttttggttgcattagct
caagccgcagtatatgcggagcagccacctgtatctagttcaatgctcccaggtcggcta
gaagaggcagcggagattatgaaacaaacgtactcggttcttccaatttttgagaagata
gtacctattttactgacagatggtatctccaagctacctgaagtttgtgcgtttacagta
ggggttccggttgggcccatgcttgcaaagcccacaaaaggtgtatcggaaatcctggac
aagttccagaacaccgtgtttacttgtgaatacaagtacgatggagaaagagcacagatt
cattacttcgaggatggcagggtcgaagtctatagcagaaatgcagagcgcaacactggg
aagtttccagatgtaacttcttccataagtggctatatgaaaccggaggtgtcttcattt
gtaatggattgcgagatagttgcatatgacaaggaaagcaacaagatcctgccttttcaa
gtcttgagcacgcgggcaaggaagggcgttattttaagtgatatcaaagtgaaagttctc
atatttgcgtttgatctcttatatctaaatggtagagtactattgcaagaacaacttgtt
agaaggcgcgagctcttatatcaatcctttatcgagaaacctggagagttccagtttgca
accgcaacaaactccaaagagctggaagagattcagagctttctggacgatgccatcaat
catagttgcgagggactaattgtcaagacactcgagaaggatgcgacgtatgagcccgca
aagcgctcaaacaattggctgaagctcaaaaaggattacatggataccataggagattcg
ctggacttggttccgatcggtgcattccatgggcgaggaaagcgagttggcgtctatggt
gcgttcctcttggcatgctatgatcccgacaaggaggaataccaaagcatttgcaaaatt
ggcacgggctttactgaagctgttctcgaggagcggtccaacactcttcgaaagcacgtc
attgacactccaaggccttactaccgatacggtgaaacgcttgcggtggacgtttggttc
gatcctgtagaggtctgggaggtgaaggctgctgatctaagcatcagtcccgtgcacaaa
gctgcgtatggcgagctggagacaagcaagggcatctctcttcgatttcctcggctgcta
agaatgagggaggataaaaaacccgagcaagcaacttcttccgaccaggtagtggatttg
tatcgcgcacaaaagataaaccatcgcagtacgaagaacgaggacgacagtagttaa

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