Serratia marcescens WW4: SMWW4_v1c01700
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Entry
SMWW4_v1c01700 CDS
T02448
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
smw
Serratia marcescens WW4
Pathway
smw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
smw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMWW4_v1c01700 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smw03021
]
SMWW4_v1c01700 (rho)
03019 Messenger RNA biogenesis [BR:
smw03019
]
SMWW4_v1c01700 (rho)
Transcription machinery [BR:
smw03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMWW4_v1c01700 (rho)
Messenger RNA biogenesis [BR:
smw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMWW4_v1c01700 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AGE15977
LinkDB
All DBs
Position
186264..187523
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIFGDGVLEILQD
GFGFLRSGDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARSKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLAAPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLARKIAEKRVFPAIDY
NRSGTRKEELLTTSEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDEFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgattactctcggcgaaaat
atggggctggaaaaccttgcccgtatgcgcaagcaggacattatcttctccattctgaag
caacatgcgaaaagcggagaagatatcttcggcgacggcgtgctcgagatattgcaggat
ggattcggtttcctccgctctggagacagttcctacctcgccggtcccgacgacatctac
gtatcccctagccaaatccgccgcttcaacctccgcactggtgacaccatttccggtaag
attcgtccgccaaaagaaggcgagcgctattttgccctgttgaaagtcaacgaagtcaac
tacgacaagccggaaaacgcccgcagcaagatcctgttcgagaacttgacgccgctgcac
gccaattctcgtctgcggatggagcgcggcaacggctcgaccgaagacctgacggcgcgc
gtactggatctggcggcgcctattggccgcggccagcgtggcctgatcgtggcaccgccg
aaagccggtaaaaccatgctgctgcagaatattgcgcagagcatcgcctacaaccaccca
gactgcgtgctgatggtgctgctgatcgatgaacgtccggaagaagtgaccgagatgcag
cgcctggtgaaaggcgaagtgatcgcctcgaccttcgacgagccggcttcgcgtcacgtg
caagtggccgaaatggtgatcgagaaggccaagcgcctggttgagcacaagaaagacgtg
atcattctgctcgactccatcacccgtctggcgcgtgcctacaacaccgtggtaccggcc
tctggcaaggtgctgaccggtggtgtggacgccaacgccctgcatcgtccgaagcgtttc
ttcggtgcggcacgtaacgtggaagagggcggcagcctgaccatcatcgcgaccgcgctg
gttgataccggttcgaagatggatgaagtgatctacgaagaatttaaaggtaccggcaac
atggaattgcatctggcgcgtaaaatcgccgagaaacgcgtattccctgcgatcgattac
aaccgctccggtacccgtaaagaagagctgctcaccacttccgaagagctgcagaaaatg
tggatcctgcgcaaaatcattcacccgatgggtgagattgacgcgatggagttcctcatt
aataagttggcgatgaccaaaaccaacgatgaattcttcgatatgatgaaacgctcataa
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