Sphingomonas melonis: BJP26_04290
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Entry
BJP26_04290 CDS
T04509
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
smy
Sphingomonas melonis
Pathway
smy02020
Two-component system
smy02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
smy00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
BJP26_04290
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BJP26_04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
smy03021
]
BJP26_04290
Transcription machinery [BR:
smy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJP26_04290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Arg_repressor
Motif
Other DBs
NCBI-ProteinID:
AOW22879
LinkDB
All DBs
Position
complement(858223..859701)
Genome browser
AA seq
492 aa
AA seq
DB search
MSLAPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEGFIAEEIEKNPLLEAAQTEEVVRP
ERIERDEPAGADDLVTGAAKADPLDVDYATESHQQDSVADGGGGFDGALGLNGGSGGGGV
GGEDGIDFDSFAEGDKSLADHLLAQAGAVIDGPDWFIAQHLIDQIDEAGYLTVPLLDIAN
RLGTALARVERVLSQIQTLDPTGVGARDLAECIALQAKEADRYDPCMARLIDNLDLLARG
ELARLKRMCGVDDEDMADMIRELRSYDPKPGCRYGGEPAPAVTPDLFVMKTKAGWGIELN
AATLPRVLVNRRYYHELSHGPQDKSAKAWLSDALASANWLIKALDQRQRTIIKVATEIVK
QQEAFFLQGVAHLKPMTLAKVAEAIEMHESTVSRVTSNKYLSCARGVFELKYFFTSAIQA
ADGGDAVSAEAVKSAIRALIAGEGAKILSDDTLVELLQAKGFDIARRTVAKYREAMGIGS
SVQRRRARALGG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgccccgcgcctcgacatccgccagtcgcaatcgctggtgatgacgccgcag
ctgcagcaggcgatcaagctgctcgcgctgtccaacctcgaaatcgaaggcttcatcgcc
gaagagatcgagaagaacccgctgctcgaagccgcacagaccgaagaggtcgtccgcccc
gaacgcatcgagcgggacgagccggccggtgccgacgacctcgtcaccggtgccgccaag
gccgatccgctcgacgtcgactatgccaccgaaagccaccagcaggacagcgtcgccgac
ggcggcggcggcttcgacggcgcattgggcctcaacggcgggtcgggtggcggtggcgtc
ggtggcgaagacggcatcgatttcgattcgtttgcggagggcgacaagagcctcgccgac
catctgctcgcccaggccggtgcggtcatcgacggccccgactggttcattgcccagcat
ctgatcgatcagatcgacgaggcgggctacctcaccgtccccctgctcgacatcgccaat
cgcctcggcactgcgctcgcccgcgtcgaacgcgtcctttcgcaaatccagacactcgac
cccaccggcgtcggcgcgcgcgacctcgccgaatgcatcgcgctccaggcgaaggaggcg
gaccgctacgatccctgtatggcgcggctgatcgacaatctcgatctcctcgcccgcggc
gagctcgcccgcctcaagcgcatgtgcggcgtcgacgacgaggacatggcggacatgatc
cgcgagctgcgcagctacgatcccaagcccggctgccgctacggcggcgaacccgcaccc
gccgtcacccccgacctgttcgtgatgaagaccaaggcgggctggggcatcgaactcaac
gccgcgacgctaccgcgcgtcctcgtcaaccgccgctattatcacgaactcagccacggc
ccgcaggacaagagcgccaaggcctggctgtccgacgcgctcgcctccgccaactggctc
atcaaggcgctggaccagcgtcagcgcacgatcatcaaggtcgcgaccgagatcgtgaag
caacaggaagcctttttcctgcaaggcgtcgcgcacctcaagccgatgacgctcgccaag
gtcgccgaggcgatcgagatgcacgaatcgaccgtcagccgcgtgacgagcaacaaatac
ttaagctgcgcgcgcggcgtcttcgagctgaaatacttcttcaccagcgcgattcaggcg
gcggatggcggcgacgcggtgtcggcggaggcggtgaagagcgcgatccgcgcgctcatc
gccggcgagggcgccaagatcctgtccgacgacacgttggtcgaactgctccaagccaaa
ggcttcgacatcgcccgccgcaccgtcgccaaataccgcgaagcgatgggcatcggcagc
tcggtacaacgccgccgcgcgcgggcgttggggggctga
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