Stenotrophomonas maltophilia D457: SMD_1271
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Entry
SMD_1271 CDS
T02061
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
smz
Stenotrophomonas maltophilia D457
Pathway
smz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
smz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMD_1271 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
smz03400
]
SMD_1271 (mfd)
Enzymes [BR:
smz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMD_1271 (mfd)
DNA repair and recombination proteins [BR:
smz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SMD_1271 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SWI2_SNF2
RecG_dom3_C
ERCC3_RAD25_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CCH11834
LinkDB
All DBs
Position
complement(1414901..1418365)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLHTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLAALHRLPALKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPSGSLPVVCAGAYEASVA
FWAQTADRYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgccgaccgccctggcctggtaccttgcccaggccgcgcgtgcg
cacgacgccccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcacaccctgctcggcggcgatccggccctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagtccgcatccggacatcatttcgcagcgcctggcc
gccctgcaccgcctgcccgcgctgaagcgtggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctacgtgatcggtggcagcttcgacctgaaggtcggc
cagcgcctggacctggaagccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggcgacttcgctgtgcgcggcggcctgctcgacgtgtacccg
atgggtgccgacgaaccgctgcgggtggaactgctggacgaggacatcgactcgatccgt
gcctttgacccggaaagccagcgttcgctggacaaggtcgaggcggtgcacatgctgccc
ggccgcgaagtgccgatggatgaagccagcatcgcccgcgtgctggccacgctgcgcgag
cggttcgatgtcgatacccggcgcagttcgctgtaccaggacctgaagtccggactggcg
ccggccggcgtcgagtactacctgccgctgttcttcgaacgcaccgcaaccctgttcgac
tacctgcccagcggcagcctgccggtggtctgtgccggtgcgtatgaagcgtccgtcgcg
ttctgggcgcagactgcggaccgctatgagcagcgccgccatgatgtggagcgcccgctg
ctgccgccgtcggcgttgtacctgtcgccggagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtgtggtcggctgaccatgcgcgcatcgccgacgcgcacgcgctgggc
gaccagccgctgcccccgctgccggtggccgcgcgcgaagcccccgctggcgatgcgctg
aaatccttcctcggccattatccgggccgggtactgatcgccgccgattcacccggccgc
cgcgaggcgctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccagcttcctcgccgatgatgcgcgcttcgcgatcgcggtagcaccactggaggat
ggcttcgcgctggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccggcgcacgcgccgtgccggccgcgagccggaagcgatcatccgc
gacctcggtgaactgaccgagggcgcgccgatcgtgcacgaggatcatggcgtcggccgc
tatcgtggcctgatcgcgatggacgtcggcggcatgcccggcgagttcctcgaaatcgaa
tatgccaagggcgaccgcctgtatgtgccggtcgcccagctgcacctgatcagccgctat
tccggtgcgtcggcggaaaccgcgccgctgcattcgctcggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaagtacgcgacgtcgccgccgaactgctggagatccag
gcccgccgccaggcgcgtgccggcctggcactgcaggtcgaccgcgcgatgtacgagccg
ttcgcggccggtttcccgttcgaggagaccccggaccagctggccgcgatcgacgccacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgtgcggcctttgcggccgccagtgccggcaagcaggtg
gctgtgctggtgccgaccacgctgctggccgaacagcattaccgcaacttccgcgaccgc
ttcgccgattacccgctgaaggtcgaggtgctgtcgcgcttcaagaccaccaaggaaatc
aaggccgagctggaaaaggtcgccgccggcaccatcgacgtgatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgtttcggcgtacgccagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctg
accctgactgccacaccgattccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgcgagctggcgcgtggtggccagctg
tatttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcgcgcatcggcatcgcccatgggcagatgcccgagcgcgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgag
tcgggcatcgacatccccaacgccaataccatcatcatcaaccgtgcggaccgtttcggc
ctggcccagctgcaccagctgcgtggccgcgtcggacgttcgcaccaccgcgcctacgcg
tacctgatcacgcccgaccgccgcgcgatcacccccgacgctgagaagcgcctggaagcg
atcgcctcgatggacgagctgggcgccggcttcaccctggccacgcacgatctggaaatc
cgcggtgccggcgaactgctcggcgaggaccagagcgggcagatggccgaggtcggcttc
agcctgtacaccgagctgctggagcgcgcggtgcgcagcatcaagcagggcaagctgccc
gaccttgatgccggcgaggaagtgcgtggtgccgaggtcgaactgcatgtgccggcactg
atcccggaagactacctgccggacgtgcatacccgcctgaccctgtacaagcgtatttcc
agcgcgcgcgacagcgatgcgctgcgcgaactgcaggtggagatgatagatcgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaggccaac
acgctgggcatccgcaagctggacctgggcgaaaatggtggccgcatcgtgttcgaatcc
aagccgaacatcgacccgatggcggtgatccagctgatccagaagcaaccgaacctgtac
gccatggaagggcccgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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