Serratia nematodiphila: NLX84_03780
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Entry
NLX84_03780 CDS
T08619
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
snem
Serratia nematodiphila
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
snem03016
]
NLX84_03780 (truD)
Enzymes [BR:
snem01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
NLX84_03780 (truD)
Transfer RNA biogenesis [BR:
snem03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NLX84_03780 (truD)
Prokaryotic type
NLX84_03780 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
SHOCT
Motif
Other DBs
NCBI-ProteinID:
UTO02217
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Position
836143..837189
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AA seq
348 aa
AA seq
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MDMANLTWLHGRPQSSGVLKANPEDFVVVEDLGFAPDGEGEHVLVNIRKNGCNTQFVADY
LARFAGIHARSVSYAGLKDRHAVTEQWFCLHMPGKDTPDFSRFTLEGCEVLSFARHLRKM
RIGNLKGNHFTLVLRQISDRQDVERRLQAIAAQGVPNYFGSQRFGRGGNNLVMARRWAND
EIRVKERSKRSFYLSASRSALFNLIASQRLADGLQRTVLEGDALQLSGRGSWFVAKADEL
ETLQQRLDAGELAITAPLPGDGEPGTAGQALVFEQQCLAEQPELLTLLKRERVEPARRAL
LLQPQNLQWNWWDDVTVELRFWLPAGSFATSVVREIMQQDNSDADIAE
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atggatatggcgaatctgacctggctgcatggccggccgcagagttccggggtgttgaaa
gccaatccggaagatttcgtggtggtcgaagatctgggttttgcaccggacggcgaaggc
gagcacgtgctggtaaatatccgtaaaaacggctgcaatacccagttcgtggccgattac
ctggcgcgcttcgccggtattcacgcccgttctgtcagctatgccggtttgaaggatcgc
cacgcggtgaccgaacagtggttctgcctgcatatgccgggcaaagacacgccggatttc
tcccggtttacgctggaaggctgcgaggtgctctcgttcgcccgccacctgcgcaaaatg
cgcatcggcaatctgaagggcaaccactttacgctggtgctgcgccagatttccgatcgg
caggacgtggaacgtcgcctgcaggccatcgccgcgcagggcgtgccaaactacttcggc
agccagcgtttcggccgtggcggcaacaacctggtgatggcgcgccgctgggcgaacgac
gaaattcgtgtcaaagagcgcagtaagcgcagcttctacctgtccgccagccgtagcgcg
ctgttcaatctgatcgcgagccaacgcctggctgacgggctgcagcgcaccgtgctggaa
ggggatgccctgcagctgagtgggcgcggcagctggttcgtcgccaaagctgatgagctg
gagacgttgcagcaacggctggatgccggcgagctggcgatcacggctcccttgccgggc
gacggtgagccaggcactgccggccaagccttggtttttgaacaacaatgcttggcggaa
caaccggaattgcttacgcttttaaagcgcgagcgtgtcgaacccgctcgccgggccctg
ctgttgcagccgcaaaatttgcagtggaactggtgggatgacgttaccgtggaactgcgc
ttctggctgccggcgggcagctttgctaccagcgtggttcgcgagatcatgcagcaggat
aacagtgatgcggatattgctgagtaa
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