Serratia nematodiphila: NLX84_12165
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Entry
NLX84_12165 CDS
T08619
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
snem
Serratia nematodiphila
Brite
KEGG Orthology (KO) [BR:
snem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snem03000
]
NLX84_12165
Transcription factors [BR:
snem03000
]
Prokaryotic type
Helix-turn-helix
Other families
NLX84_12165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
AAA_2
HTH_30
Mg_chelatase
Xre-like-HTH
HTH_23
HTH_29
AAA_5
HTH_28
AAA
HTH_1
IclR
HTH_psq
HTH_7
HTH_22
AAA_3
HTH_50
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UTO03737
LinkDB
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Position
2535099..2536874
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AA seq
591 aa
AA seq
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MLSDDRLPAEGASLLTQPLAESWQRSQGYGLTRTDQHIPFIKAGLLEELRSRNDWVPQRV
QPLIEQLGAQITRQPAIVVIADADGLVLETRGNTDFLHKASRFALAPGNQWGEAERGTNA
IGTALALGAFCEVRGDQHFLNQNAGLNCTAAPIYRPDGRIAGILDLSAPAQRPYRDAQRL
IMQAVRHIEHRWVRSAIADRHWTLRLHADARCLGSAQELLLVFHDEVLIAANRLAMMEFQ
LSSASFGSVEFTQLFPDLLRQPSGAPRQTLAGNQQHYYSLLEAPQRRVSALRSAPPAERH
DEQHQKALRILNAGLSLCVTGETGCGKEHFSRRLFQESRWRNGNFVAINCAALPEPLIES
ELFGYAPGAFTGANPKGYIGKIREADGGVLFLDEIGDMPAGLQTRLLRVLQEKTVTPLGS
RSAYPVEFALVCATHHDLHRQVEAGAFREDLLYRIQEYSLRIPPLRERAQLEAFILQLWR
ELGGERRDIRLLPEALAMLARYPWPGNVRQLLSTLKVLLALADDHAVLTLDDLPQSIAVL
APRQENADTDLGALQAAIDRAGGNLSRAAKALGVSRSTLYRRLGRQKTAAE
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgttgtctgacgaccgcttgcccgcagagggcgccagcttgctgacccagccgttggcg
gaatcctggcaacgcagccagggttatggcttgacgcgcaccgatcaacatatcccgttt
atcaaagccggattgctcgaagagctgcgcagccgcaacgattgggtgccgcagcgggta
cagccgctgatcgagcagctgggcgcgcaaattacgcgccagcccgccattgtggtgatc
gccgacgccgacgggctggtgctggaaacccgcggcaataccgactttctgcataaggcg
tcgcgctttgcgctggcgccgggcaaccagtggggagaagcggagcggggcaccaacgcc
atcggcaccgcgctggcgctgggtgcgttctgcgaagtgcgcggcgaccagcattttctc
aaccaaaatgccggattgaactgcaccgccgcaccgatctatcggccggatggccgcatt
gccggcatactggatctctccgcacccgcgcagcgcccgtaccgcgatgcacagcgcctg
atcatgcaggcggtgcggcatatcgaacaccgctgggtcagaagcgcgatcgccgaccgc
cactggacgctgcgtctgcacgccgatgcccgctgcctgggcagcgcgcaagagctgctg
ctggtgtttcacgacgaagtgctgatcgccgccaatcgactggcgatgatggagttccag
ctctcgtcggcctcattcggctccgttgagttcacccagctgtttcccgacctgttgcga
cagccttccggggcaccgcgccagacgctggccggcaatcaacagcactattattcgttg
cttgaggcgccgcagcgccgcgtcagcgctctgcgttctgcgccgccggcggaacggcac
gacgagcagcatcagaaagcgctgcgcattctcaacgccggcctttcgctgtgcgtgacc
ggcgaaaccggctgcggtaaagagcatttcagccgccgcctgtttcaagagagccgctgg
cgcaacggcaacttcgtggcgatcaactgcgcggcgctgcctgagccgctgatcgaatcc
gaactgtttggctatgcgccgggggcgtttaccggcgccaatccgaaaggctacatcggc
aagatccgcgaggcggacggcggcgtgctgtttctcgatgaaatcggcgacatgccggcg
ggtctgcaaacgcgcctgttgcgggtattacaggaaaaaacggtcaccccgctcggcagc
cgcagcgcttatccggtcgagttcgcgctggtctgcgccacgcaccacgatctgcatcgg
caggtagaggcgggggcgtttcgcgaggatttgctgtaccgcatacaggaatacagcctg
cgcattccgccgctcagagagcgggcgcagctggaggccttcattttgcagctgtggcga
gagctgggcggcgagcggcgcgacattcgtctgttgccggaggcgctggcgatgctggcg
cgctatccgtggcccggcaacgtgcggcaactgttgagcacgctcaaggtgctgctggcg
ctggcggacgatcatgcggtgcttaccctggacgatcttcctcagtccattgcggtgctg
gcgccgcggcaagagaacgccgataccgatctgggggcgctgcaggcggcgatcgacagg
gcgggcggcaatctcagccgggcggcgaaggcgctcggcgtttcacgcagcacgctgtac
cgcaggctggggaggcagaaaacggcggcggaataa
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